RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 RHPN2Q8IUC4 686 aa13.61□□□□□ -0.23
LINC00339-213ENST00000642137 TRIML1Q8N9V2 468 aa13.61□□□□□ -0.23
LINC00339-213ENST00000642137 ERCC4Q92889 916 aaPredicted RBP13.61□□□□□ -0.23
LINC00339-213ENST00000642137 KCNN1Q92952 543 aa13.61□□□□□ -0.23
LINC00339-213ENST00000642137 FAM49AQ9H0Q0 323 aaPredicted RBP13.61□□□□□ -0.23
LINC00339-213ENST00000642137 OLFML3Q9NRN5 406 aa13.61□□□□□ -0.23
LINC00339-213ENST00000642137 EXOC1Q9NV70 894 aa13.61□□□□□ -0.23
LINC00339-213ENST00000642137 CCDC169A6NNP5 214 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 H0YCG3 227 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 GPR32O75388 356 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 VTNP04004 478 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 NPTX2P47972 431 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 GPC3P51654 580 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 NLRP11P59045 1033 aaKnown RBP13.6□□□□□ -0.23
LINC00339-213ENST00000642137 RBL2Q08999 1139 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 FAAP100Q0VG06 881 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 DMP1Q13316 513 aaPredicted RBP13.6□□□□□ -0.23
LINC00339-213ENST00000642137 BFSP2Q13515 415 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 LRRC26Q2I0M4 334 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 TRIM71Q2Q1W2 868 aaKnown RBP13.6□□□□□ -0.23
LINC00339-213ENST00000642137 TRIM60Q495X7 471 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 FAM26DQ5JW98 314 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 ZNF720Q7Z2F6 126 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 ZNF410Q86VK4 478 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 SFR1Q86XK3 245 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 IFNLR1Q8IU57 520 aaPredicted RBP13.6□□□□□ -0.23
LINC00339-213ENST00000642137 FAM178BQ8IXR5 827 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 CCDC155Q8N6L0 562 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 CAGE1Q8TC20 777 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 BSNDQ8WZ55 320 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 DHX38Q92620 1227 aaKnown RBP13.6□□□□□ -0.23
LINC00339-213ENST00000642137 FIZ1Q96SL8 496 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 NFKBIZQ9BYH8 718 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 ST6GALNAC4Q9H4F1 302 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 KMT5AQ9NQR1 393 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 MAN1B1Q9UKM7 699 aa13.6□□□□□ -0.23
LINC00339-213ENST00000642137 M0QZ92 97 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 PQBP1O60828 265 aaKnown RBP13.59□□□□□ -0.23
LINC00339-213ENST00000642137 SRGAP2CP0DJJ0 459 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 ABCD1P33897 745 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 THPOP40225 353 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 CRYBB1P53674 252 aaPredicted RBP13.59□□□□□ -0.23
LINC00339-213ENST00000642137 NCKAP1LP55160 1127 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 PTENP60484 403 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 CAPSQ13938 189 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 MORC3Q14149 939 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 FAM26FQ5R3K3 315 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 ZNF658Q5TYW1 1059 aaPredicted RBP13.59□□□□□ -0.23
LINC00339-213ENST00000642137 SRGAP1Q7Z6B7 1085 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 KSR1Q8IVT5 923 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 RNF149Q8NC42 400 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 WNT8BQ93098 351 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 CELF4Q9BZC1 486 aaKnown RBP13.59□□□□□ -0.23
LINC00339-213ENST00000642137 INO80BQ9C086 356 aaPredicted RBP13.59□□□□□ -0.23
LINC00339-213ENST00000642137 C2orf40Q9H1Z8 148 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 ADAMTS10Q9H324 1103 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 TMEM134Q9H6X4 195 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 MRPL44Q9H9J2 332 aaKnown RBP13.59□□□□□ -0.23
LINC00339-213ENST00000642137 ATP11BQ9Y2G3 1177 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 PCDHB13Q9Y5F0 798 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 PHLPP2Q6ZVD8 1323 aa13.59□□□□□ -0.23
LINC00339-213ENST00000642137 CENPFP49454 3210 aa13.58□□□□□ -0.23
LINC00339-213ENST00000642137 A0A087WZ62 844 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 CKBP12277 381 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 NMT1P30419 496 aaKnown RBP13.58□□□□□ -0.24
LINC00339-213ENST00000642137 EFNA5P52803 228 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 MRPS6P82932 125 aaKnown RBP13.58□□□□□ -0.24
LINC00339-213ENST00000642137 GTF2BQ00403 316 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 MGAT3Q09327 533 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 STK4Q13043 487 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 ALCAMQ13740 583 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 COBLL1Q53SF7 1204 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 CDCA2Q69YH5 1023 aaPredicted RBP13.58□□□□□ -0.24
LINC00339-213ENST00000642137 HAUS6Q7Z4H7 955 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 ZBTB8OSQ8IWT0 167 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 TMEM161BQ8NDZ6 487 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 DEPTORQ8TB45 409 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 ZNF507Q8TCN5 953 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 NLRP4Q96MN2 994 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 FDXACB1Q9BRP7 624 aaPredicted RBP13.58□□□□□ -0.24
LINC00339-213ENST00000642137 STRA6Q9BX79 667 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 GCOM2Q9BZD3 368 aaPredicted RBP13.58□□□□□ -0.24
LINC00339-213ENST00000642137 IFT122Q9HBG6 1241 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 SLC39A2Q9NP94 309 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 TBC1D7Q9P0N9 293 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 ARHGAP28Q9P2N2 729 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 TRPV2Q9Y5S1 764 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 SQORQ9Y6N5 450 aa13.58□□□□□ -0.24
LINC00339-213ENST00000642137 LRRIQ4A6NIV6 560 aa13.57□□□□□ -0.24
LINC00339-213ENST00000642137 K7ERI5 159 aa13.57□□□□□ -0.24
LINC00339-213ENST00000642137 PITPNM1O00562 1244 aa13.57□□□□□ -0.24
LINC00339-213ENST00000642137 SLC16A4O15374 487 aa13.57□□□□□ -0.24
LINC00339-213ENST00000642137 KIF20AO95235 890 aa13.57□□□□□ -0.24
LINC00339-213ENST00000642137 CHRNA1P02708 482 aa13.57□□□□□ -0.24
LINC00339-213ENST00000642137 CLTBP09497 229 aa13.57□□□□□ -0.24
LINC00339-213ENST00000642137 EIF4BP23588 611 aaKnown RBP13.57□□□□□ -0.24
LINC00339-213ENST00000642137 PPP1R2P41236 205 aa13.57□□□□□ -0.24
LINC00339-213ENST00000642137 PHKA2P46019 1235 aa13.57□□□□□ -0.24
LINC00339-213ENST00000642137 NLRP12P59046 1061 aa13.57□□□□□ -0.24
LINC00339-213ENST00000642137 TMEM62Q0P6H9 643 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms