RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 CHAMP1Q96JM3 812 aa10.96□□□□□ -0.65
CLN3-261ENST00000637686 NLRP4Q96MN2 994 aa10.96□□□□□ -0.65
CLN3-261ENST00000637686 FAM161BQ96MY7 647 aa10.96□□□□□ -0.65
CLN3-261ENST00000637686 FDXACB1Q9BRP7 624 aaPredicted RBP10.96□□□□□ -0.65
CLN3-261ENST00000637686 FTHL17Q9BXU8 183 aa10.96□□□□□ -0.65
CLN3-261ENST00000637686 GCOM2Q9BZD3 368 aaPredicted RBP10.96□□□□□ -0.65
CLN3-261ENST00000637686 NKX2-4Q9H2Z4 354 aa10.96□□□□□ -0.65
CLN3-261ENST00000637686 SEMA6BQ9H3T3 888 aa10.96□□□□□ -0.65
CLN3-261ENST00000637686 ATP6V0A4Q9HBG4 840 aa10.96□□□□□ -0.65
CLN3-261ENST00000637686 GDPD2Q9HCC8 539 aa10.96□□□□□ -0.65
CLN3-261ENST00000637686 XPNPEP1Q9NQW7 623 aa10.96□□□□□ -0.65
CLN3-261ENST00000637686 DDX19AQ9NUU7 478 aaKnown RBP10.96□□□□□ -0.65
CLN3-261ENST00000637686 DBR1Q9UK59 544 aaKnown RBP10.96□□□□□ -0.65
CLN3-261ENST00000637686 ST3GAL5Q9UNP4 418 aa10.96□□□□□ -0.65
CLN3-261ENST00000637686 PCDHA11Q9Y5I1 949 aa10.96□□□□□ -0.65
CLN3-261ENST00000637686 COL4A3BPQ9Y5P4 624 aa10.96□□□□□ -0.65
CLN3-261ENST00000637686 PTPRSQ13332 1948 aa10.96□□□□□ -0.66
CLN3-261ENST00000637686 GBF1Q92538 1859 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 E9PMD0 336 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 TLL1O43897 1013 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 UPP2O95045 317 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 GJB5O95377 273 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 SRGAP2CP0DJJ0 459 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 FGFR4P22455 802 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 LAMTOR4Q0VGL1 99 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 ODR4Q5SWX8 454 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 RESP18Q5W5W9 173 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 ZNF410Q86VK4 478 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 KCTD17Q8N5Z5 321 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 ASAP3Q8TDY4 903 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 MRPS27Q92552 414 aaKnown RBP10.95□□□□□ -0.66
CLN3-261ENST00000637686 TOP1MTQ969P6 601 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 PNMA5Q96PV4 448 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 PLIN2Q99541 437 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 ZBED2Q9BTP6 218 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 ANP32EQ9BTT0 268 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 TTYH1Q9H313 450 aaPredicted RBP10.95□□□□□ -0.66
CLN3-261ENST00000637686 DNM3Q9UQ16 869 aa10.95□□□□□ -0.66
CLN3-261ENST00000637686 ASAP2O43150 1006 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 MGEA5O60502 916 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 CA3P07451 260 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 CYP11B2P19099 503 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 IBSPP21815 317 aaPredicted RBP10.94□□□□□ -0.66
CLN3-261ENST00000637686 ARL2P36404 184 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 GRB10Q13322 594 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 HYIQ5T013 277 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 FAM102BQ5T8I3 360 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 PADI6Q6TGC4 694 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 KCNK18Q7Z418 384 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 CABP7Q86V35 215 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 ELOA2Q8IYF1 753 aaPredicted RBP10.94□□□□□ -0.66
CLN3-261ENST00000637686 RNF149Q8NC42 400 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 SYAP1Q96A49 352 aaPredicted RBP10.94□□□□□ -0.66
CLN3-261ENST00000637686 TIGD1Q96MW7 591 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 ADAM2Q99965 735 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 CCSER1Q9C0I3 900 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 POLR3FQ9H1D9 316 aaPredicted RBP10.94□□□□□ -0.66
CLN3-261ENST00000637686 TSPYL2Q9H2G4 693 aaPredicted RBP10.94□□□□□ -0.66
CLN3-261ENST00000637686 BHMT2Q9H2M3 363 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 ZNF576Q9H609 170 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 SLC28A3Q9HAS3 691 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 IFT122Q9HBG6 1241 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 GPRC5CQ9NQ84 441 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 FAM13BQ9NYF5 915 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 USP25Q9UHP3 1055 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 HPSEQ9Y251 543 aa10.94□□□□□ -0.66
CLN3-261ENST00000637686 TMEM265A0A087WTH1 108 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 DENND3A2RUS2 1198 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 LCHNA4D1U4 455 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 TRAK2O60296 914 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 GADD45BO75293 160 aaPredicted RBP10.93□□□□□ -0.66
CLN3-261ENST00000637686 ARHGEF15O94989 841 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 EYA4O95677 639 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 GLRA2P23416 452 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 TXLNAP40222 546 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 UBA7P41226 1012 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 FAM160A1Q05DH4 1040 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 DSC3Q14574 896 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 MXD4Q14582 209 aaPredicted RBP10.93□□□□□ -0.66
CLN3-261ENST00000637686 SPECC1Q5M775 1068 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 PPP2R2DQ66LE6 453 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 SHC4Q6S5L8 630 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 CCDC73Q6ZRK6 1079 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 FSIP1Q8NA03 581 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 MCPH1Q8NEM0 835 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 CDK5RAP3Q96JB5 506 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 CLIC6Q96NY7 704 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 YME1L1Q96TA2 773 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 RAD9AQ99638 391 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 INO80BQ9C086 356 aaPredicted RBP10.93□□□□□ -0.66
CLN3-261ENST00000637686 NT5C3AQ9H0P0 336 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 CSRNP2Q9H175 543 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 POLD4Q9HCU8 107 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 RGS18Q9NS28 235 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 MTMR10Q9NXD2 777 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 INSL6Q9Y581 213 aa10.93□□□□□ -0.66
CLN3-261ENST00000637686 ZSCAN20P17040 1043 aaPredicted RBP10.92□□□□□ -0.66
CLN3-261ENST00000637686 SFPQP23246 707 aaKnown RBP eCLIP10.92□□□□□ -0.66
CLN3-261ENST00000637686 SARSP49591 514 aaKnown RBP10.92□□□□□ -0.66
CLN3-261ENST00000637686 HTRA4P83105 476 aaPredicted RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms