RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 NEMFO60524 1076 aa13.02□□□□□ -0.33
CLN3-257ENST00000637110 P4HBP07237 508 aaKnown RBP13.02□□□□□ -0.33
CLN3-257ENST00000637110 BMPR1AP36894 532 aa13.02□□□□□ -0.33
CLN3-257ENST00000637110 TXKP42681 527 aa13.02□□□□□ -0.33
CLN3-257ENST00000637110 ADAM15Q13444 863 aa13.02□□□□□ -0.33
CLN3-257ENST00000637110 BTG3Q14201 252 aaPredicted RBP13.02□□□□□ -0.33
CLN3-257ENST00000637110 CBX2Q14781 532 aaPredicted RBP13.02□□□□□ -0.33
CLN3-257ENST00000637110 EPHA7Q15375 998 aa13.02□□□□□ -0.33
CLN3-257ENST00000637110 PLA2G4FQ68DD2 849 aa13.02□□□□□ -0.33
CLN3-257ENST00000637110 ASCL5Q7RTU5 278 aa13.02□□□□□ -0.33
CLN3-257ENST00000637110 RTN4RL1Q86UN2 441 aaPredicted RBP13.02□□□□□ -0.33
CLN3-257ENST00000637110 TMEM40Q8WWA1 233 aa13.02□□□□□ -0.33
CLN3-257ENST00000637110 HAS1Q92839 578 aa13.02□□□□□ -0.33
CLN3-257ENST00000637110 TNFRSF25Q93038 417 aa13.02□□□□□ -0.33
CLN3-257ENST00000637110 NIFKQ9BYG3 293 aaKnown RBP13.02□□□□□ -0.33
CLN3-257ENST00000637110 ERVK-5Q9HDB9 667 aa13.02□□□□□ -0.33
CLN3-257ENST00000637110 PCDHA12Q9UN75 941 aa13.02□□□□□ -0.33
CLN3-257ENST00000637110 PCDHB7Q9Y5E2 793 aa13.02□□□□□ -0.33
CLN3-257ENST00000637110 WDR81Q562E7 1941 aa13.01□□□□□ -0.33
CLN3-257ENST00000637110 CACNA1BQ00975 2339 aa13.01□□□□□ -0.33
CLN3-257ENST00000637110 GRM6O15303 877 aa13.01□□□□□ -0.33
CLN3-257ENST00000637110 ZSCAN20P17040 1043 aaPredicted RBP13.01□□□□□ -0.33
CLN3-257ENST00000637110 MCM7P33993 719 aa13.01□□□□□ -0.33
CLN3-257ENST00000637110 CYP4A11Q02928 519 aa13.01□□□□□ -0.33
CLN3-257ENST00000637110 CTTNQ14247 550 aaKnown RBP13.01□□□□□ -0.33
CLN3-257ENST00000637110 PAN2Q504Q3 1202 aaKnown RBP13.01□□□□□ -0.33
CLN3-257ENST00000637110 B3GNT9Q6UX72 402 aa13.01□□□□□ -0.33
CLN3-257ENST00000637110 OTUD6AQ7L8S5 288 aa13.01□□□□□ -0.33
CLN3-257ENST00000637110 NPAS4Q8IUM7 802 aa13.01□□□□□ -0.33
CLN3-257ENST00000637110 TPH2Q8IWU9 490 aa13.01□□□□□ -0.33
CLN3-257ENST00000637110 SMRP1Q8NCR6 262 aa13.01□□□□□ -0.33
CLN3-257ENST00000637110 LINC01599Q8WXQ3 324 aa13.01□□□□□ -0.33
CLN3-257ENST00000637110 ASIC4Q96FT7 647 aa13.01□□□□□ -0.33
CLN3-257ENST00000637110 DYDC2Q96IM9 177 aa13.01□□□□□ -0.33
CLN3-257ENST00000637110 MSLNLQ96KJ4 702 aa13.01□□□□□ -0.33
CLN3-257ENST00000637110 CEP170P1Q96L14 293 aa13.01□□□□□ -0.33
CLN3-257ENST00000637110 CCDC43Q96MW1 224 aaKnown RBP13.01□□□□□ -0.33
CLN3-257ENST00000637110 ADAM2Q99965 735 aa13.01□□□□□ -0.33
CLN3-257ENST00000637110 JPH2Q9BR39 696 aaPredicted RBP13.01□□□□□ -0.33
CLN3-257ENST00000637110 PHF7Q9BWX1 381 aaPredicted RBP13.01□□□□□ -0.33
CLN3-257ENST00000637110 TTC12Q9H892 705 aaPredicted RBP13.01□□□□□ -0.33
CLN3-257ENST00000637110 RNF216Q9NWF9 866 aaPredicted RBP13.01□□□□□ -0.33
CLN3-257ENST00000637110 SUCLA2Q9P2R7 463 aaPredicted RBP13.01□□□□□ -0.33
CLN3-257ENST00000637110 DCHS1Q96JQ0 3298 aa13□□□□□ -0.33
CLN3-257ENST00000637110 ADGRA3Q8IWK6 1321 aa13□□□□□ -0.33
CLN3-257ENST00000637110 LINC01565O15544 149 aa13□□□□□ -0.33
CLN3-257ENST00000637110 GALR2O43603 387 aaPredicted RBP13□□□□□ -0.33
CLN3-257ENST00000637110 GPR32O75388 356 aa13□□□□□ -0.33
CLN3-257ENST00000637110 DGKIO75912 1065 aa13□□□□□ -0.33
CLN3-257ENST00000637110 NBL1P41271 181 aa13□□□□□ -0.33
CLN3-257ENST00000637110 GPC3P51654 580 aa13□□□□□ -0.33
CLN3-257ENST00000637110 POLGP54098 1239 aaPredicted RBP13□□□□□ -0.33
CLN3-257ENST00000637110 NPEPPSP55786 919 aa13□□□□□ -0.33
CLN3-257ENST00000637110 COASYQ13057 564 aa13□□□□□ -0.33
CLN3-257ENST00000637110 TARBP2Q15633 366 aaKnown RBP13□□□□□ -0.33
CLN3-257ENST00000637110 ZNF174Q15697 407 aa13□□□□□ -0.33
CLN3-257ENST00000637110 XKR9Q5GH70 373 aa13□□□□□ -0.33
CLN3-257ENST00000637110 SPOUT1Q5T280 376 aaKnown RBP13□□□□□ -0.33
CLN3-257ENST00000637110 ANO5Q75V66 913 aa13□□□□□ -0.33
CLN3-257ENST00000637110 FAM228AQ86W67 206 aa13□□□□□ -0.33
CLN3-257ENST00000637110 RHPN2Q8IUC4 686 aa13□□□□□ -0.33
CLN3-257ENST00000637110 ZNF710Q8N1W2 664 aa13□□□□□ -0.33
CLN3-257ENST00000637110 SLC7A3Q8WY07 619 aa13□□□□□ -0.33
CLN3-257ENST00000637110 LXNQ9BS40 222 aa13□□□□□ -0.33
CLN3-257ENST00000637110 PLVAPQ9BX97 442 aa13□□□□□ -0.33
CLN3-257ENST00000637110 GCOM2Q9BZD3 368 aaPredicted RBP13□□□□□ -0.33
CLN3-257ENST00000637110 TMX1Q9H3N1 280 aa13□□□□□ -0.33
CLN3-257ENST00000637110 ZSWIM4Q9H7M6 989 aa13□□□□□ -0.33
CLN3-257ENST00000637110 CYP26B1Q9NR63 512 aa13□□□□□ -0.33
CLN3-257ENST00000637110 C1orf112Q9NSG2 853 aa13□□□□□ -0.33
CLN3-257ENST00000637110 BMP2KQ9NSY1 1161 aaPredicted RBP13□□□□□ -0.33
CLN3-257ENST00000637110 RGL1Q9NZL6 768 aa13□□□□□ -0.33
CLN3-257ENST00000637110 NOL7Q9UMY1 257 aaKnown RBP13□□□□□ -0.33
CLN3-257ENST00000637110 KIF3AQ9Y496 699 aa13□□□□□ -0.33
CLN3-257ENST00000637110 MGEA5O60502 916 aa12.99□□□□□ -0.33
CLN3-257ENST00000637110 STBD1O95210 358 aa12.99□□□□□ -0.33
CLN3-257ENST00000637110 FGFR4P22455 802 aa12.99□□□□□ -0.33
CLN3-257ENST00000637110 EIF4BP23588 611 aaKnown RBP12.99□□□□□ -0.33
CLN3-257ENST00000637110 YWHABP31946 246 aaKnown RBP12.99□□□□□ -0.33
CLN3-257ENST00000637110 GTF2F1P35269 517 aaKnown RBP eCLIP12.99□□□□□ -0.33
CLN3-257ENST00000637110 SARSP49591 514 aaKnown RBP12.99□□□□□ -0.33
CLN3-257ENST00000637110 CDC42EP1Q00587 391 aa12.99□□□□□ -0.33
CLN3-257ENST00000637110 DRP2Q13474 957 aa12.99□□□□□ -0.33
CLN3-257ENST00000637110 SLC24A5Q71RS6 500 aa12.99□□□□□ -0.33
CLN3-257ENST00000637110 LINC01465Q8N7H1 131 aa12.99□□□□□ -0.33
CLN3-257ENST00000637110 EFHBQ8N7U6 833 aa12.99□□□□□ -0.33
CLN3-257ENST00000637110 FBXO18Q8NFZ0 1043 aa12.99□□□□□ -0.33
CLN3-257ENST00000637110 NKD2Q969F2 451 aaPredicted RBP12.99□□□□□ -0.33
CLN3-257ENST00000637110 RPGRIP1Q96KN7 1286 aa12.99□□□□□ -0.33
CLN3-257ENST00000637110 NLRP4Q96MN2 994 aa12.99□□□□□ -0.33
CLN3-257ENST00000637110 EIF2AK1Q9BQI3 630 aaKnown RBP12.99□□□□□ -0.33
CLN3-257ENST00000637110 ADAMTS10Q9H324 1103 aa12.99□□□□□ -0.33
CLN3-257ENST00000637110 FOXP1Q9H334 677 aaPredicted RBP12.99□□□□□ -0.33
CLN3-257ENST00000637110 ATP6V0A4Q9HBG4 840 aa12.99□□□□□ -0.33
CLN3-257ENST00000637110 RGS18Q9NS28 235 aa12.99□□□□□ -0.33
CLN3-257ENST00000637110 A0A087WZ62 844 aa12.98□□□□□ -0.33
CLN3-257ENST00000637110 WNT7AO00755 349 aa12.98□□□□□ -0.33
CLN3-257ENST00000637110 MAFO75444 373 aaPredicted RBP12.98□□□□□ -0.33
CLN3-257ENST00000637110 CSPG5O95196 566 aa12.98□□□□□ -0.33
CLN3-257ENST00000637110 DARSP14868 501 aaKnown RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 113.4 ms