RNA–Protein interactions for RNA: ENST00000635450.2

LINC00339-209, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 947 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-209ENST00000635450 DDX11L8A8MPP1 907 aa17.4■□□□□ 0.38
LINC00339-209ENST00000635450 OR52Z1P0C646 297 aa17.4■□□□□ 0.38
LINC00339-209ENST00000635450 DARSP14868 501 aaKnown RBP17.4■□□□□ 0.38
LINC00339-209ENST00000635450 ATF7P17544 494 aaPredicted RBP17.4■□□□□ 0.38
LINC00339-209ENST00000635450 PDCP20941 246 aa17.4■□□□□ 0.38
LINC00339-209ENST00000635450 EIF4BP23588 611 aaKnown RBP17.4■□□□□ 0.38
LINC00339-209ENST00000635450 CTC1Q2NKJ3 1217 aa17.4■□□□□ 0.38
LINC00339-209ENST00000635450 KSR1Q8IVT5 923 aa17.4■□□□□ 0.38
LINC00339-209ENST00000635450 P2RX5Q93086 422 aa17.4■□□□□ 0.38
LINC00339-209ENST00000635450 MTMR9Q96QG7 549 aa17.4■□□□□ 0.38
LINC00339-209ENST00000635450 NIFKQ9BYG3 293 aaKnown RBP17.4■□□□□ 0.38
LINC00339-209ENST00000635450 TMEM60Q9H2L4 133 aa17.4■□□□□ 0.38
LINC00339-209ENST00000635450 BMP2KQ9NSY1 1161 aaPredicted RBP17.4■□□□□ 0.38
LINC00339-209ENST00000635450 TMEM161AQ9NX61 479 aa17.4■□□□□ 0.38
LINC00339-209ENST00000635450 PBX3P40426 434 aa17.39■□□□□ 0.37
LINC00339-209ENST00000635450 NPEPPSP55786 919 aa17.39■□□□□ 0.37
LINC00339-209ENST00000635450 FAM189BP81408 668 aa17.39■□□□□ 0.37
LINC00339-209ENST00000635450 RBM10P98175 930 aaKnown RBP17.39■□□□□ 0.37
LINC00339-209ENST00000635450 SPIRE1Q08AE8 756 aa17.39■□□□□ 0.37
LINC00339-209ENST00000635450 CLLU1OSQ5K130 101 aa17.39■□□□□ 0.37
LINC00339-209ENST00000635450 LRRC55Q6ZSA7 311 aa17.39■□□□□ 0.37
LINC00339-209ENST00000635450 HSCBQ8IWL3 235 aa17.39■□□□□ 0.37
LINC00339-209ENST00000635450 FAM178BQ8IXR5 827 aa17.39■□□□□ 0.37
LINC00339-209ENST00000635450 POF1BQ8WVV4 589 aa17.39■□□□□ 0.37
LINC00339-209ENST00000635450 NLRP7Q8WX94 980 aa17.39■□□□□ 0.37
LINC00339-209ENST00000635450 SNX21Q969T3 373 aa17.39■□□□□ 0.37
LINC00339-209ENST00000635450 INTS4Q96HW7 963 aaKnown RBP17.39■□□□□ 0.37
LINC00339-209ENST00000635450 DYDC2Q96IM9 177 aa17.39■□□□□ 0.37
LINC00339-209ENST00000635450 SCLT1Q96NL6 688 aa17.39■□□□□ 0.37
LINC00339-209ENST00000635450 LXNQ9BS40 222 aa17.39■□□□□ 0.37
LINC00339-209ENST00000635450 IGFLR1Q9H665 355 aa17.39■□□□□ 0.37
LINC00339-209ENST00000635450 CWH43Q9H720 699 aa17.39■□□□□ 0.37
LINC00339-209ENST00000635450 ZSWIM4Q9H7M6 989 aa17.39■□□□□ 0.37
LINC00339-209ENST00000635450 TYW1Q9NV66 732 aaKnown RBP17.39■□□□□ 0.37
LINC00339-209ENST00000635450 A0A087WZ62 844 aa17.38■□□□□ 0.37
LINC00339-209ENST00000635450 CYP4A11Q02928 519 aa17.38■□□□□ 0.37
LINC00339-209ENST00000635450 RILPL1Q5EBL4 403 aa17.38■□□□□ 0.37
LINC00339-209ENST00000635450 OTUD6AQ7L8S5 288 aa17.38■□□□□ 0.37
LINC00339-209ENST00000635450 TPH2Q8IWU9 490 aa17.38■□□□□ 0.37
LINC00339-209ENST00000635450 C4orf19Q8IY42 314 aa17.38■□□□□ 0.37
LINC00339-209ENST00000635450 COLGALT1Q8NBJ5 622 aa17.38■□□□□ 0.37
LINC00339-209ENST00000635450 CASD1Q96PB1 797 aa17.38■□□□□ 0.37
LINC00339-209ENST00000635450 EIF2AK1Q9BQI3 630 aaKnown RBP17.38■□□□□ 0.37
LINC00339-209ENST00000635450 FDXACB1Q9BRP7 624 aaPredicted RBP17.38■□□□□ 0.37
LINC00339-209ENST00000635450 ATP6V0A4Q9HBG4 840 aa17.38■□□□□ 0.37
LINC00339-209ENST00000635450 RGL1Q9NZL6 768 aa17.38■□□□□ 0.37
LINC00339-209ENST00000635450 ZBTB39O15060 712 aa17.37■□□□□ 0.37
LINC00339-209ENST00000635450 MAFO75444 373 aaPredicted RBP17.37■□□□□ 0.37
LINC00339-209ENST00000635450 GLP2RO95838 553 aa17.37■□□□□ 0.37
LINC00339-209ENST00000635450 TECP42680 631 aa17.37■□□□□ 0.37
LINC00339-209ENST00000635450 DNM2P50570 870 aa17.37■□□□□ 0.37
LINC00339-209ENST00000635450 CTTNQ14247 550 aaKnown RBP17.37■□□□□ 0.37
LINC00339-209ENST00000635450 NBR1Q14596 966 aa17.37■□□□□ 0.37
LINC00339-209ENST00000635450 SPOUT1Q5T280 376 aaKnown RBP17.37■□□□□ 0.37
LINC00339-209ENST00000635450 FAM43BQ6ZT52 329 aaPredicted RBP17.37■□□□□ 0.37
LINC00339-209ENST00000635450 ECHDC2Q86YB7 292 aa17.37■□□□□ 0.37
LINC00339-209ENST00000635450 EXOC8Q8IYI6 725 aa17.37■□□□□ 0.37
LINC00339-209ENST00000635450 ZNF710Q8N1W2 664 aa17.37■□□□□ 0.37
LINC00339-209ENST00000635450 RNF169Q8NCN4 708 aa17.37■□□□□ 0.37
LINC00339-209ENST00000635450 JPH2Q9BR39 696 aaPredicted RBP17.37■□□□□ 0.37
LINC00339-209ENST00000635450 C11orf16Q9NQ32 467 aa17.37■□□□□ 0.37
LINC00339-209ENST00000635450 PPME1Q9Y570 386 aa17.37■□□□□ 0.37
LINC00339-209ENST00000635450 VPS37CA5D8V6 355 aaPredicted RBP17.36■□□□□ 0.37
LINC00339-209ENST00000635450 POTEMA6NI47 508 aa17.36■□□□□ 0.37
LINC00339-209ENST00000635450 MEIS3P2A8K0S8 358 aa17.36■□□□□ 0.37
LINC00339-209ENST00000635450 FGF18O76093 207 aa17.36■□□□□ 0.37
LINC00339-209ENST00000635450 SLITRK3O94933 977 aa17.36■□□□□ 0.37
LINC00339-209ENST00000635450 COL9A1P20849 921 aa17.36■□□□□ 0.37
LINC00339-209ENST00000635450 YWHABP31946 246 aaKnown RBP17.36■□□□□ 0.37
LINC00339-209ENST00000635450 TOB1P50616 345 aaPredicted RBP17.36■□□□□ 0.37
LINC00339-209ENST00000635450 ODR4Q5SWX8 454 aa17.36■□□□□ 0.37
LINC00339-209ENST00000635450 RBM23Q86U06 439 aaKnown RBP17.36■□□□□ 0.37
LINC00339-209ENST00000635450 ZNF598Q86UK7 904 aaKnown RBP17.36■□□□□ 0.37
LINC00339-209ENST00000635450 RHPN2Q8IUC4 686 aa17.36■□□□□ 0.37
LINC00339-209ENST00000635450 ERMNQ8TAM6 284 aa17.36■□□□□ 0.37
LINC00339-209ENST00000635450 CEP170P1Q96L14 293 aa17.36■□□□□ 0.37
LINC00339-209ENST00000635450 NLRP4Q96MN2 994 aa17.36■□□□□ 0.37
LINC00339-209ENST00000635450 CCDC43Q96MW1 224 aaKnown RBP17.36■□□□□ 0.37
LINC00339-209ENST00000635450 RAB34Q9BZG1 259 aa17.36■□□□□ 0.37
LINC00339-209ENST00000635450 ELAC1Q9H777 363 aaKnown RBP17.36■□□□□ 0.37
LINC00339-209ENST00000635450 CYP26B1Q9NR63 512 aa17.36■□□□□ 0.37
LINC00339-209ENST00000635450 SUCLA2Q9P2R7 463 aaPredicted RBP17.36■□□□□ 0.37
LINC00339-209ENST00000635450 PCDHB6Q9Y5E3 794 aa17.36■□□□□ 0.37
LINC00339-209ENST00000635450 TRIOO75962 3097 aa17.35■□□□□ 0.37
LINC00339-209ENST00000635450 FAM86C2PA6NEL3 165 aa17.35■□□□□ 0.37
LINC00339-209ENST00000635450 LAD1O00515 517 aa17.35■□□□□ 0.37
LINC00339-209ENST00000635450 HSP90AA1P07900 732 aaKnown RBP17.35■□□□□ 0.37
LINC00339-209ENST00000635450 NRIP1P48552 1158 aa17.35■□□□□ 0.37
LINC00339-209ENST00000635450 ERVFC1P60507 584 aa17.35■□□□□ 0.37
LINC00339-209ENST00000635450 PTGDRQ13258 359 aa17.35■□□□□ 0.37
LINC00339-209ENST00000635450 LONRF3Q496Y0 759 aa17.35■□□□□ 0.37
LINC00339-209ENST00000635450 NAALADL2Q58DX5 795 aa17.35■□□□□ 0.37
LINC00339-209ENST00000635450 XKR9Q5GH70 373 aa17.35■□□□□ 0.37
LINC00339-209ENST00000635450 VN1R2Q8NFZ6 395 aa17.35■□□□□ 0.37
LINC00339-209ENST00000635450 HELQQ8TDG4 1101 aa17.35■□□□□ 0.37
LINC00339-209ENST00000635450 LPPQ93052 612 aa17.35■□□□□ 0.37
LINC00339-209ENST00000635450 TMEM117Q9H0C3 514 aa17.35■□□□□ 0.37
LINC00339-209ENST00000635450 FOXD4L1Q9NU39 408 aa17.35■□□□□ 0.37
LINC00339-209ENST00000635450 ZSCAN20P17040 1043 aaPredicted RBP17.34■□□□□ 0.37
LINC00339-209ENST00000635450 POLGP54098 1239 aaPredicted RBP17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms