RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 TMEM184AQ6ZMB5 413 aa13.37□□□□□ -0.27
UPF3B-204ENST00000619445 SLC7A3Q8WY07 619 aa13.37□□□□□ -0.27
UPF3B-204ENST00000619445 CASD1Q96PB1 797 aa13.37□□□□□ -0.27
UPF3B-204ENST00000619445 PHF20Q9BVI0 1012 aa13.37□□□□□ -0.27
UPF3B-204ENST00000619445 ENTPD7Q9NQZ7 604 aa13.37□□□□□ -0.27
UPF3B-204ENST00000619445 DDX11L8A8MPP1 907 aa13.36□□□□□ -0.27
UPF3B-204ENST00000619445 FSCN2O14926 492 aa13.36□□□□□ -0.27
UPF3B-204ENST00000619445 LINC01565O15544 149 aa13.36□□□□□ -0.27
UPF3B-204ENST00000619445 MARCH6O60337 910 aa13.36□□□□□ -0.27
UPF3B-204ENST00000619445 PFKFB2O60825 505 aa13.36□□□□□ -0.27
UPF3B-204ENST00000619445 MAFO75444 373 aaPredicted RBP13.36□□□□□ -0.27
UPF3B-204ENST00000619445 CSPG5O95196 566 aa13.36□□□□□ -0.27
UPF3B-204ENST00000619445 BAG4O95429 457 aaKnown RBP13.36□□□□□ -0.27
UPF3B-204ENST00000619445 P4HBP07237 508 aaKnown RBP13.36□□□□□ -0.27
UPF3B-204ENST00000619445 GTF2F1P35269 517 aaKnown RBP eCLIP13.36□□□□□ -0.27
UPF3B-204ENST00000619445 ALDH7A1P49419 539 aaKnown RBP13.36□□□□□ -0.27
UPF3B-204ENST00000619445 STK3Q13188 491 aa13.36□□□□□ -0.27
UPF3B-204ENST00000619445 PCBP1Q15365 356 aaKnown RBP eCLIP13.36□□□□□ -0.27
UPF3B-204ENST00000619445 NPY5RQ15761 445 aa13.36□□□□□ -0.27
UPF3B-204ENST00000619445 INF2Q27J81 1249 aa13.36□□□□□ -0.27
UPF3B-204ENST00000619445 LETM2Q2VYF4 491 aa13.36□□□□□ -0.27
UPF3B-204ENST00000619445 OTUD6AQ7L8S5 288 aa13.36□□□□□ -0.27
UPF3B-204ENST00000619445 ADGRD2Q7Z7M1 963 aa13.36□□□□□ -0.27
UPF3B-204ENST00000619445 RBM23Q86U06 439 aaKnown RBP13.36□□□□□ -0.27
UPF3B-204ENST00000619445 ZNF598Q86UK7 904 aaKnown RBP13.36□□□□□ -0.27
UPF3B-204ENST00000619445 SLFN12Q8IYM2 578 aa13.36□□□□□ -0.27
UPF3B-204ENST00000619445 PHF7Q9BWX1 381 aaPredicted RBP13.36□□□□□ -0.27
UPF3B-204ENST00000619445 KCNMB3Q9NPA1 279 aa13.36□□□□□ -0.27
UPF3B-204ENST00000619445 CLEC1BQ9P126 229 aa13.36□□□□□ -0.27
UPF3B-204ENST00000619445 SUCLA2Q9P2R7 463 aaPredicted RBP13.36□□□□□ -0.27
UPF3B-204ENST00000619445 FAM86C2PA6NEL3 165 aa13.35□□□□□ -0.27
UPF3B-204ENST00000619445 RFC5P40937 340 aa13.35□□□□□ -0.27
UPF3B-204ENST00000619445 GIT2Q14161 759 aa13.35□□□□□ -0.27
UPF3B-204ENST00000619445 ERICH6BQ5W0A0 696 aa13.35□□□□□ -0.27
UPF3B-204ENST00000619445 TWF2Q6IBS0 349 aaKnown RBP13.35□□□□□ -0.27
UPF3B-204ENST00000619445 GLB1LQ6UWU2 654 aa13.35□□□□□ -0.27
UPF3B-204ENST00000619445 TMC7Q7Z402 723 aa13.35□□□□□ -0.27
UPF3B-204ENST00000619445 RNF169Q8NCN4 708 aa13.35□□□□□ -0.27
UPF3B-204ENST00000619445 PGBD4Q96DM1 585 aa13.35□□□□□ -0.27
UPF3B-204ENST00000619445 MFSD14AQ96MC6 490 aa13.35□□□□□ -0.27
UPF3B-204ENST00000619445 TCF25Q9BQ70 676 aa13.35□□□□□ -0.27
UPF3B-204ENST00000619445 CYP26B1Q9NR63 512 aa13.35□□□□□ -0.27
UPF3B-204ENST00000619445 RAPGEFL1Q9UHV5 662 aa13.35□□□□□ -0.27
UPF3B-204ENST00000619445 ASAP2O43150 1006 aa13.34□□□□□ -0.27
UPF3B-204ENST00000619445 CCNT1O60563 726 aaKnown RBP13.34□□□□□ -0.27
UPF3B-204ENST00000619445 ZNF623O75123 536 aa13.34□□□□□ -0.27
UPF3B-204ENST00000619445 GLP2RO95838 553 aa13.34□□□□□ -0.27
UPF3B-204ENST00000619445 PHKA2P46019 1235 aa13.34□□□□□ -0.27
UPF3B-204ENST00000619445 ERVFC1P60507 584 aa13.34□□□□□ -0.27
UPF3B-204ENST00000619445 SCRN1Q12765 414 aa13.34□□□□□ -0.27
UPF3B-204ENST00000619445 SMC1AQ14683 1233 aaKnown RBP13.34□□□□□ -0.27
UPF3B-204ENST00000619445 CBX2Q14781 532 aaPredicted RBP13.34□□□□□ -0.27
UPF3B-204ENST00000619445 EPHA7Q15375 998 aa13.34□□□□□ -0.27
UPF3B-204ENST00000619445 TPRNQ4KMQ1 711 aa13.34□□□□□ -0.27
UPF3B-204ENST00000619445 ANO5Q75V66 913 aa13.34□□□□□ -0.27
UPF3B-204ENST00000619445 CATSPER4Q7RTX7 472 aa13.34□□□□□ -0.27
UPF3B-204ENST00000619445 RHPN2Q8IUC4 686 aa13.34□□□□□ -0.27
UPF3B-204ENST00000619445 RNF135Q8IUD6 432 aa13.34□□□□□ -0.27
UPF3B-204ENST00000619445 C4orf19Q8IY42 314 aa13.34□□□□□ -0.27
UPF3B-204ENST00000619445 TCP11Q8WWU5 503 aa13.34□□□□□ -0.27
UPF3B-204ENST00000619445 PSPC1Q8WXF1 523 aaKnown RBP13.34□□□□□ -0.27
UPF3B-204ENST00000619445 TMEM169Q96HH4 297 aa13.34□□□□□ -0.27
UPF3B-204ENST00000619445 CEP89Q96ST8 783 aa13.34□□□□□ -0.27
UPF3B-204ENST00000619445 RNF19AQ9NV58 838 aa13.34□□□□□ -0.27
UPF3B-204ENST00000619445 KCNJ14Q9UNX9 436 aa13.34□□□□□ -0.27
UPF3B-204ENST00000619445 USP15Q9Y4E8 981 aaPredicted RBP13.34□□□□□ -0.27
UPF3B-204ENST00000619445 A0A087WZ62 844 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 LOC730098B7Z3J9 87 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 SLC37A4O43826 429 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 STBD1O95210 358 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 POLGP54098 1239 aaPredicted RBP13.33□□□□□ -0.27
UPF3B-204ENST00000619445 CLLU1OSQ5K130 101 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 PLPP4Q5VZY2 271 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 LRRC55Q6ZSA7 311 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 SRGAP1Q7Z6B7 1085 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 SLC39A11Q8N1S5 342 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 TMEM87AQ8NBN3 555 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 HELQQ8TDG4 1101 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 EDAQ92838 391 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 CASP10Q92851 521 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 GJA10Q969M2 543 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 CEP170P1Q96L14 293 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 FDXACB1Q9BRP7 624 aaPredicted RBP13.33□□□□□ -0.27
UPF3B-204ENST00000619445 ZSWIM4Q9H7M6 989 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 FOXD4L1Q9NU39 408 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 ORC3Q9UBD5 711 aaPredicted RBP13.33□□□□□ -0.27
UPF3B-204ENST00000619445 VAV3Q9UKW4 847 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 BARX2Q9UMQ3 279 aaPredicted RBP13.33□□□□□ -0.27
UPF3B-204ENST00000619445 PIN4Q9Y237 131 aaKnown RBP13.33□□□□□ -0.27
UPF3B-204ENST00000619445 COL4A3BPQ9Y5P4 624 aa13.33□□□□□ -0.27
UPF3B-204ENST00000619445 ZNF318Q5VUA4 2279 aa13.33□□□□□ -0.28
UPF3B-204ENST00000619445 PER2O15055 1255 aa13.32□□□□□ -0.28
UPF3B-204ENST00000619445 KRT2P35908 639 aa13.32□□□□□ -0.28
UPF3B-204ENST00000619445 ITIH3Q06033 890 aa13.32□□□□□ -0.28
UPF3B-204ENST00000619445 NCBP1Q09161 790 aaKnown RBP13.32□□□□□ -0.28
UPF3B-204ENST00000619445 DRP2Q13474 957 aa13.32□□□□□ -0.28
UPF3B-204ENST00000619445 KCNC3Q14003 757 aa13.32□□□□□ -0.28
UPF3B-204ENST00000619445 CES5AQ6NT32 575 aa13.32□□□□□ -0.28
UPF3B-204ENST00000619445 ANKRD54Q6NXT1 300 aa13.32□□□□□ -0.28
UPF3B-204ENST00000619445 PIK3AP1Q6ZUJ8 805 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms