RNA–Protein interactions for RNA: ENST00000617771.5

VEGFA-228, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best) BASIC

Gene VEGFA, Length 1,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-228ENST00000617771 A0A0U1RQF3 1178 aa28.16■■■□□ 2.1
VEGFA-228ENST00000617771 ATP2B1P20020 1258 aa28.16■■■□□ 2.1
VEGFA-228ENST00000617771 GNL2Q13823 731 aaKnown RBP28.16■■■□□ 2.1
VEGFA-228ENST00000617771 CSPP1Q1MSJ5 1256 aa28.16■■■□□ 2.1
VEGFA-228ENST00000617771 KSR1Q8IVT5 923 aa28.16■■■□□ 2.1
VEGFA-228ENST00000617771 FBXO18Q8NFZ0 1043 aa28.16■■■□□ 2.1
VEGFA-228ENST00000617771 PPP2R3CQ969Q6 453 aa28.16■■■□□ 2.1
VEGFA-228ENST00000617771 NECAB3Q96P71 396 aaPredicted RBP28.16■■■□□ 2.1
VEGFA-228ENST00000617771 UPF2Q9HAU5 1272 aaKnown RBP28.16■■■□□ 2.1
VEGFA-228ENST00000617771 TYW1Q9NV66 732 aaKnown RBP28.16■■■□□ 2.1
VEGFA-228ENST00000617771 FNDC1Q4ZHG4 1894 aaPredicted RBP28.15■■■□□ 2.1
VEGFA-228ENST00000617771 CSPG5O95196 566 aa28.15■■■□□ 2.1
VEGFA-228ENST00000617771 LYPLA2O95372 231 aa28.15■■■□□ 2.1
VEGFA-228ENST00000617771 EOMESO95936 686 aa28.15■■■□□ 2.1
VEGFA-228ENST00000617771 MCM7P33993 719 aa28.15■■■□□ 2.1
VEGFA-228ENST00000617771 EMC2Q15006 297 aa28.15■■■□□ 2.1
VEGFA-228ENST00000617771 RNF169Q8NCN4 708 aa28.15■■■□□ 2.1
VEGFA-228ENST00000617771 POF1BQ8WVV4 589 aa28.15■■■□□ 2.1
VEGFA-228ENST00000617771 TMEM143Q96AN5 459 aa28.15■■■□□ 2.1
VEGFA-228ENST00000617771 HSD17B14Q9BPX1 270 aa28.15■■■□□ 2.1
VEGFA-228ENST00000617771 ST18O60284 1047 aa28.14■■■□□ 2.1
VEGFA-228ENST00000617771 LAG3P18627 525 aa28.14■■■□□ 2.1
VEGFA-228ENST00000617771 ORC2Q13416 577 aaPredicted RBP28.14■■■□□ 2.1
VEGFA-228ENST00000617771 COL19A1Q14993 1142 aa28.14■■■□□ 2.1
VEGFA-228ENST00000617771 EP400NLQ6ZTU2 488 aa28.14■■■□□ 2.1
VEGFA-228ENST00000617771 CATSPER4Q7RTX7 472 aa28.14■■■□□ 2.1
VEGFA-228ENST00000617771 LRRC43Q8N309 656 aa28.14■■■□□ 2.1
VEGFA-228ENST00000617771 PRPF31Q8WWY3 499 aaKnown RBP28.14■■■□□ 2.1
VEGFA-228ENST00000617771 CCDC43Q96MW1 224 aaKnown RBP28.14■■■□□ 2.1
VEGFA-228ENST00000617771 CASD1Q96PB1 797 aa28.14■■■□□ 2.1
VEGFA-228ENST00000617771 BMP2KQ9NSY1 1161 aaPredicted RBP28.14■■■□□ 2.1
VEGFA-228ENST00000617771 RNF19AQ9NV58 838 aa28.14■■■□□ 2.1
VEGFA-228ENST00000617771 CLDND1Q9NY35 253 aa28.14■■■□□ 2.1
VEGFA-228ENST00000617771 PIN4Q9Y237 131 aaKnown RBP28.14■■■□□ 2.1
VEGFA-228ENST00000617771 ASAP2O43150 1006 aa28.13■■■□□ 2.09
VEGFA-228ENST00000617771 SKIP12755 728 aa28.13■■■□□ 2.09
VEGFA-228ENST00000617771 UBE3AQ05086 875 aa28.13■■■□□ 2.09
VEGFA-228ENST00000617771 CAMK1Q14012 370 aa28.13■■■□□ 2.09
VEGFA-228ENST00000617771 PUS10Q3MIT2 529 aaKnown RBP28.13■■■□□ 2.09
VEGFA-228ENST00000617771 TWF2Q6IBS0 349 aaKnown RBP28.13■■■□□ 2.09
VEGFA-228ENST00000617771 THNSL1Q8IYQ7 743 aa28.13■■■□□ 2.09
VEGFA-228ENST00000617771 COLGALT1Q8NBJ5 622 aa28.13■■■□□ 2.09
VEGFA-228ENST00000617771 MTRQ99707 1265 aa28.13■■■□□ 2.09
VEGFA-228ENST00000617771 TRAIPQ9BWF2 469 aa28.13■■■□□ 2.09
VEGFA-228ENST00000617771 TMEM60Q9H2L4 133 aa28.13■■■□□ 2.09
VEGFA-228ENST00000617771 CWH43Q9H720 699 aa28.13■■■□□ 2.09
VEGFA-228ENST00000617771 IFT122Q9HBG6 1241 aa28.13■■■□□ 2.09
VEGFA-228ENST00000617771 ANKEF1Q9NU02 776 aa28.13■■■□□ 2.09
VEGFA-228ENST00000617771 TCF20Q9UGU0 1960 aaKnown RBP28.13■■■□□ 2.09
VEGFA-228ENST00000617771 ZBTB39O15060 712 aa28.12■■■□□ 2.09
VEGFA-228ENST00000617771 DNAJB1P25685 340 aa28.12■■■□□ 2.09
VEGFA-228ENST00000617771 LAMTOR4Q0VGL1 99 aa28.12■■■□□ 2.09
VEGFA-228ENST00000617771 HYAL1Q12794 435 aa28.12■■■□□ 2.09
VEGFA-228ENST00000617771 SRGAP1Q7Z6B7 1085 aa28.12■■■□□ 2.09
VEGFA-228ENST00000617771 ZNF598Q86UK7 904 aaKnown RBP28.12■■■□□ 2.09
VEGFA-228ENST00000617771 GADD45GIP1Q8TAE8 222 aaPredicted RBP28.12■■■□□ 2.09
VEGFA-228ENST00000617771 HCSTQ9UBK5 93 aa28.12■■■□□ 2.09
VEGFA-228ENST00000617771 FGF18O76093 207 aa28.11■■■□□ 2.09
VEGFA-228ENST00000617771 SRGAP2CP0DJJ0 459 aa28.11■■■□□ 2.09
VEGFA-228ENST00000617771 PHKA2P46019 1235 aa28.11■■■□□ 2.09
VEGFA-228ENST00000617771 FERMT3Q86UX7 667 aa28.11■■■□□ 2.09
VEGFA-228ENST00000617771 NOSTRINQ8IVI9 506 aa28.11■■■□□ 2.09
VEGFA-228ENST00000617771 RSPH1Q8WYR4 309 aa28.11■■■□□ 2.09
VEGFA-228ENST00000617771 POTEMA6NI47 508 aa28.1■■■□□ 2.09
VEGFA-228ENST00000617771 H3BQ06 376 aaPredicted RBP28.1■■■□□ 2.09
VEGFA-228ENST00000617771 DGAT1O75907 488 aa28.1■■■□□ 2.09
VEGFA-228ENST00000617771 ATF7P17544 494 aaPredicted RBP28.1■■■□□ 2.09
VEGFA-228ENST00000617771 RAB27AP51159 221 aa28.1■■■□□ 2.09
VEGFA-228ENST00000617771 CLLU1OSQ5K130 101 aa28.1■■■□□ 2.09
VEGFA-228ENST00000617771 PTCRAQ6ISU1 281 aaPredicted RBP28.1■■■□□ 2.09
VEGFA-228ENST00000617771 MRPL9Q9BYD2 267 aaKnown RBP28.1■■■□□ 2.09
VEGFA-228ENST00000617771 IGFLR1Q9H665 355 aa28.1■■■□□ 2.09
VEGFA-228ENST00000617771 NOL7Q9UMY1 257 aaKnown RBP28.1■■■□□ 2.09
VEGFA-228ENST00000617771 KIF3AQ9Y496 699 aa28.1■■■□□ 2.09
VEGFA-228ENST00000617771 TRAPPC10P48553 1259 aa28.09■■■□□ 2.09
VEGFA-228ENST00000617771 MXD4Q14582 209 aaPredicted RBP28.09■■■□□ 2.09
VEGFA-228ENST00000617771 ZNF174Q15697 407 aa28.09■■■□□ 2.09
VEGFA-228ENST00000617771 CTC1Q2NKJ3 1217 aa28.09■■■□□ 2.09
VEGFA-228ENST00000617771 TTC38Q5R3I4 469 aa28.09■■■□□ 2.09
VEGFA-228ENST00000617771 LRRC55Q6ZSA7 311 aa28.09■■■□□ 2.09
VEGFA-228ENST00000617771 HELQQ8TDG4 1101 aa28.09■■■□□ 2.09
VEGFA-228ENST00000617771 AGPAT5Q9NUQ2 364 aa28.09■■■□□ 2.09
VEGFA-228ENST00000617771 FAM50BQ9Y247 325 aa28.09■■■□□ 2.09
VEGFA-228ENST00000617771 ATG2AQ2TAZ0 1938 aa28.09■■■□□ 2.09
VEGFA-228ENST00000617771 MUC3AQ02505 3323 aa28.08■■■□□ 2.09
VEGFA-228ENST00000617771 OR52Z1P0C646 297 aa28.08■■■□□ 2.09
VEGFA-228ENST00000617771 XRCC6P12956 609 aaKnown RBP eCLIP28.08■■■□□ 2.091e-10■□□□□ 8.4
VEGFA-228ENST00000617771 IRS1P35568 1242 aa28.08■■■□□ 2.09
VEGFA-228ENST00000617771 PPM1AP35813 382 aa28.08■■■□□ 2.09
VEGFA-228ENST00000617771 RNF149Q8NC42 400 aa28.08■■■□□ 2.09
VEGFA-228ENST00000617771 ERMNQ8TAM6 284 aa28.08■■■□□ 2.09
VEGFA-228ENST00000617771 ZNF558Q96NG5 402 aa28.08■■■□□ 2.09
VEGFA-228ENST00000617771 TUFT1Q9NNX1 390 aa28.08■■■□□ 2.09
VEGFA-228ENST00000617771 XPNPEP1Q9NQW7 623 aa28.08■■■□□ 2.09
VEGFA-228ENST00000617771 TLR9Q9NR96 1032 aa28.08■■■□□ 2.09
VEGFA-228ENST00000617771 FAM105AQ9NUU6 356 aa28.08■■■□□ 2.09
VEGFA-228ENST00000617771 ARID2Q68CP9 1835 aa28.08■■■□□ 2.09
VEGFA-228ENST00000617771 GRXCR2A6NFK2 248 aa28.07■■■□□ 2.08
VEGFA-228ENST00000617771 TECP42680 631 aa28.07■■■□□ 2.08
VEGFA-228ENST00000617771 RARRES1P49788 294 aa28.07■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms