RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 KCNC3Q14003 757 aa21.29■■□□□ 1
CDX1-202ENST00000616154 CLLU1OSQ5K130 101 aa21.29■■□□□ 1
CDX1-202ENST00000616154 PLPP4Q5VZY2 271 aa21.29■■□□□ 1
CDX1-202ENST00000616154 TMEM184AQ6ZMB5 413 aa21.29■■□□□ 1
CDX1-202ENST00000616154 HFE2Q6ZVN8 426 aa21.29■■□□□ 1
CDX1-202ENST00000616154 ZNF598Q86UK7 904 aaKnown RBP21.29■■□□□ 1
CDX1-202ENST00000616154 ETNPPLQ8TBG4 499 aa21.29■■□□□ 1
CDX1-202ENST00000616154 NLRP7Q8WX94 980 aa21.29■■□□□ 1
CDX1-202ENST00000616154 SUSD6Q92537 303 aa21.29■■□□□ 1
CDX1-202ENST00000616154 EDAQ92838 391 aa21.29■■□□□ 1
CDX1-202ENST00000616154 CEP89Q96ST8 783 aa21.29■■□□□ 1
CDX1-202ENST00000616154 TCF25Q9BQ70 676 aa21.29■■□□□ 1
CDX1-202ENST00000616154 PHF7Q9BWX1 381 aaPredicted RBP21.29■■□□□ 1
CDX1-202ENST00000616154 KCNH6Q9H252 994 aa21.29■■□□□ 1
CDX1-202ENST00000616154 NGRNQ9NPE2 291 aaKnown RBP21.29■■□□□ 1
CDX1-202ENST00000616154 DACT1Q9NYF0 836 aa21.29■■□□□ 1
CDX1-202ENST00000616154 IGKV6-21A0A0C4DH24 114 aa21.29■■□□□ 1
CDX1-202ENST00000616154 LARGE1O95461 756 aa21.29■■□□□ 1
CDX1-202ENST00000616154 EOMESO95936 686 aa21.29■■□□□ 1
CDX1-202ENST00000616154 FGFR4P22455 802 aa21.29■■□□□ 1
CDX1-202ENST00000616154 RBM25P49756 843 aaKnown RBP21.29■■□□□ 1
CDX1-202ENST00000616154 NEK4P51957 841 aa21.29■■□□□ 1
CDX1-202ENST00000616154 DRP2Q13474 957 aa21.29■■□□□ 1
CDX1-202ENST00000616154 MTERF2Q49AM1 385 aa21.29■■□□□ 1
CDX1-202ENST00000616154 RNF169Q8NCN4 708 aa21.29■■□□□ 1
CDX1-202ENST00000616154 GCOM2Q9BZD3 368 aaPredicted RBP21.29■■□□□ 1
CDX1-202ENST00000616154 ENTPD7Q9NQZ7 604 aa21.29■■□□□ 1
CDX1-202ENST00000616154 PBX3P40426 434 aa21.28■■□□□ 1
CDX1-202ENST00000616154 KRT17Q04695 432 aa21.28■■□□□ 1
CDX1-202ENST00000616154 MFSD14AQ96MC6 490 aa21.28■■□□□ 1
CDX1-202ENST00000616154 TBC1D32Q96NH3 1257 aa21.28■■□□□ 1
CDX1-202ENST00000616154 CHST12Q9NRB3 414 aa21.28■■□□□ 1
CDX1-202ENST00000616154 SPG21Q9NZD8 308 aa21.28■■□□□ 1
CDX1-202ENST00000616154 TMEM150BA6NC51 233 aa21.27■□□□□ 0.99
CDX1-202ENST00000616154 FDPSP14324 419 aaKnown RBP21.27■□□□□ 0.99
CDX1-202ENST00000616154 NONOQ15233 471 aaKnown RBP eCLIP21.27■□□□□ 0.99
CDX1-202ENST00000616154 KRT25Q7Z3Z0 450 aa21.27■□□□□ 0.99
CDX1-202ENST00000616154 SLC39A11Q8N1S5 342 aa21.27■□□□□ 0.99
CDX1-202ENST00000616154 HELQQ8TDG4 1101 aa21.27■□□□□ 0.99
CDX1-202ENST00000616154 KIF2CQ99661 725 aa21.27■□□□□ 0.99
CDX1-202ENST00000616154 TRAIPQ9BWF2 469 aa21.27■□□□□ 0.99
CDX1-202ENST00000616154 MRPL9Q9BYD2 267 aaKnown RBP21.27■□□□□ 0.99
CDX1-202ENST00000616154 UPF2Q9HAU5 1272 aaKnown RBP21.27■□□□□ 0.99
CDX1-202ENST00000616154 WDFY4Q6ZS81 3184 aa21.26■□□□□ 0.99
CDX1-202ENST00000616154 HIDE1A8MVS5 230 aa21.26■□□□□ 0.99
CDX1-202ENST00000616154 XBP1P17861 261 aa21.26■□□□□ 0.99
CDX1-202ENST00000616154 SFPQP23246 707 aaKnown RBP eCLIP21.26■□□□□ 0.99
CDX1-202ENST00000616154 DNM2P50570 870 aa21.26■□□□□ 0.99
CDX1-202ENST00000616154 ANKRD54Q6NXT1 300 aa21.26■□□□□ 0.99
CDX1-202ENST00000616154 ZNF410Q86VK4 478 aa21.26■□□□□ 0.99
CDX1-202ENST00000616154 NSUN7Q8NE18 718 aaKnown RBP21.26■□□□□ 0.99
CDX1-202ENST00000616154 RSPH1Q8WYR4 309 aa21.26■□□□□ 0.99
CDX1-202ENST00000616154 WASF1Q92558 559 aa21.26■□□□□ 0.99
CDX1-202ENST00000616154 S1PR5Q9H228 398 aa21.26■□□□□ 0.99
CDX1-202ENST00000616154 ORC3Q9UBD5 711 aaPredicted RBP21.26■□□□□ 0.99
CDX1-202ENST00000616154 DDX25Q9UHL0 483 aaKnown RBP21.26■□□□□ 0.99
CDX1-202ENST00000616154 KCNJ14Q9UNX9 436 aa21.26■□□□□ 0.99
CDX1-202ENST00000616154 A0A087WZ62 844 aa21.25■□□□□ 0.99
CDX1-202ENST00000616154 MAFO75444 373 aaPredicted RBP21.25■□□□□ 0.99
CDX1-202ENST00000616154 CSDE1O75534 798 aaKnown RBP21.25■□□□□ 0.99
CDX1-202ENST00000616154 TECP42680 631 aa21.25■□□□□ 0.99
CDX1-202ENST00000616154 PSMC5P62195 406 aa21.25■□□□□ 0.99
CDX1-202ENST00000616154 ST3GAL1Q11201 340 aa21.25■□□□□ 0.99
CDX1-202ENST00000616154 BMP8AQ7Z5Y6 402 aa21.25■□□□□ 0.99
CDX1-202ENST00000616154 NECAB1Q8N987 351 aa21.25■□□□□ 0.99
CDX1-202ENST00000616154 RPGRIP1Q96KN7 1286 aa21.25■□□□□ 0.99
CDX1-202ENST00000616154 SH2D3AQ9BRG2 576 aa21.25■□□□□ 0.99
CDX1-202ENST00000616154 FDXACB1Q9BRP7 624 aaPredicted RBP21.25■□□□□ 0.99
CDX1-202ENST00000616154 SUCLA2Q9P2R7 463 aaPredicted RBP21.25■□□□□ 0.99
CDX1-202ENST00000616154 DDX11L8A8MPP1 907 aa21.24■□□□□ 0.99
CDX1-202ENST00000616154 SLC37A4O43826 429 aa21.24■□□□□ 0.99
CDX1-202ENST00000616154 PHKA2P46019 1235 aa21.24■□□□□ 0.99
CDX1-202ENST00000616154 ZXDAP98168 799 aa21.24■□□□□ 0.99
CDX1-202ENST00000616154 SMC1AQ14683 1233 aaKnown RBP21.24■□□□□ 0.99
CDX1-202ENST00000616154 INF2Q27J81 1249 aa21.24■□□□□ 0.99
CDX1-202ENST00000616154 LLGL2Q6P1M3 1020 aa21.24■□□□□ 0.99
CDX1-202ENST00000616154 SYCE2Q6PIF2 218 aa21.24■□□□□ 0.99
CDX1-202ENST00000616154 TRIM67Q6ZTA4 783 aa21.24■□□□□ 0.99
CDX1-202ENST00000616154 ANO5Q75V66 913 aa21.24■□□□□ 0.99
CDX1-202ENST00000616154 TMC7Q7Z402 723 aa21.24■□□□□ 0.99
CDX1-202ENST00000616154 FBXL18Q96ME1 805 aa21.24■□□□□ 0.99
CDX1-202ENST00000616154 JPH2Q9BR39 696 aaPredicted RBP21.24■□□□□ 0.99
CDX1-202ENST00000616154 INO80BQ9C086 356 aaPredicted RBP21.24■□□□□ 0.99
CDX1-202ENST00000616154 ZDBF2Q9HCK1 2354 aa21.23■□□□□ 0.99
CDX1-202ENST00000616154 TMEM221A6NGB7 291 aa21.23■□□□□ 0.99
CDX1-202ENST00000616154 M0R296 226 aa21.23■□□□□ 0.99
CDX1-202ENST00000616154 SKIP12755 728 aa21.23■□□□□ 0.99
CDX1-202ENST00000616154 HOXB8P17481 243 aaPredicted RBP21.23■□□□□ 0.99
CDX1-202ENST00000616154 BCAR1P56945 870 aa21.23■□□□□ 0.99
CDX1-202ENST00000616154 PPP2R5CQ13362 524 aa21.23■□□□□ 0.99
CDX1-202ENST00000616154 RHPN2Q8IUC4 686 aa21.23■□□□□ 0.99
CDX1-202ENST00000616154 MRPL43Q8N983 215 aaKnown RBP21.23■□□□□ 0.99
CDX1-202ENST00000616154 TNFRSF25Q93038 417 aa21.23■□□□□ 0.99
CDX1-202ENST00000616154 KCNMB3Q9NPA1 279 aa21.23■□□□□ 0.99
CDX1-202ENST00000616154 GJB4Q9NTQ9 266 aa21.23■□□□□ 0.99
CDX1-202ENST00000616154 VAV3Q9UKW4 847 aa21.23■□□□□ 0.99
CDX1-202ENST00000616154 ARID2Q68CP9 1835 aa21.22■□□□□ 0.99
CDX1-202ENST00000616154 C2orf71A6NGG8 1288 aa21.22■□□□□ 0.99
CDX1-202ENST00000616154 EML1O00423 815 aa21.22■□□□□ 0.99
CDX1-202ENST00000616154 ALDH7A1P49419 539 aaKnown RBP21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms