RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 IQCKQ8N0W5 287 aa13.52□□□□□ -0.25
MSH6-213ENST00000614496 INPP4AQ96PE3 977 aaPredicted RBP13.52□□□□□ -0.25
MSH6-213ENST00000614496 XPO6Q96QU8 1125 aaKnown RBP13.52□□□□□ -0.25
MSH6-213ENST00000614496 TRIM7Q9C029 511 aa13.52□□□□□ -0.25
MSH6-213ENST00000614496 DDX4Q9NQI0 724 aaKnown RBP13.52□□□□□ -0.25
MSH6-213ENST00000614496 PCDHGC5Q9Y5F6 944 aa13.52□□□□□ -0.25
MSH6-213ENST00000614496 ZBTB39O15060 712 aa13.52□□□□□ -0.25
MSH6-213ENST00000614496 TOM1O60784 492 aa13.52□□□□□ -0.25
MSH6-213ENST00000614496 NOL4O94818 638 aa13.52□□□□□ -0.25
MSH6-213ENST00000614496 SUN1O94901 812 aa13.52□□□□□ -0.25
MSH6-213ENST00000614496 HSPA9P38646 679 aaKnown RBP13.52□□□□□ -0.25
MSH6-213ENST00000614496 PEX3P56589 373 aa13.52□□□□□ -0.25
MSH6-213ENST00000614496 ATP11AP98196 1134 aa13.52□□□□□ -0.25
MSH6-213ENST00000614496 STK33Q9BYT3 514 aa13.52□□□□□ -0.25
MSH6-213ENST00000614496 KLHL14Q9P2G3 628 aa13.52□□□□□ -0.25
MSH6-213ENST00000614496 DDX3XO00571 662 aaKnown RBP eCLIP13.51□□□□□ -0.257e-19■■■■■ 42.4
MSH6-213ENST00000614496 NDUFB10O96000 172 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 ARMC9Q7Z3E5 817 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 SYT2Q8N9I0 419 aaPredicted RBP13.51□□□□□ -0.25
MSH6-213ENST00000614496 FBXO25Q8TCJ0 367 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 MICAL1Q8TDZ2 1067 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 FBF1Q8TES7 1133 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 CHURC1Q8WUH1 139 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 POMGNT1Q8WZA1 660 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 CALR3Q96L12 384 aaKnown RBP13.51□□□□□ -0.25
MSH6-213ENST00000614496 RUNDC3BQ96NL0 473 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 AGPAT1Q99943 283 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 ADAM33Q9BZ11 813 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 SUCLA2Q9P2R7 463 aaPredicted RBP13.51□□□□□ -0.25
MSH6-213ENST00000614496 PPP1R9AQ9ULJ8 1098 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 SSTR3P32745 418 aaPredicted RBP13.51□□□□□ -0.25
MSH6-213ENST00000614496 ADCY2Q08462 1091 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 MIGA2Q7L4E1 593 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 SLC30A5Q8TAD4 765 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 DCAF4Q8WV16 495 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 C18orf8Q96DM3 657 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 BTBD6Q96KE9 485 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 ERP44Q9BS26 406 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 MRPL11Q9Y3B7 192 aaKnown RBP13.51□□□□□ -0.25
MSH6-213ENST00000614496 CEP83Q9Y592 693 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 MARF1Q9Y4F3 1742 aaKnown RBP13.51□□□□□ -0.25
MSH6-213ENST00000614496 FOXN3O00409 490 aaPredicted RBP13.51□□□□□ -0.25
MSH6-213ENST00000614496 MSH4O15457 936 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 SLC8A1P32418 973 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 FLT3P36888 993 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 SAAL1Q96ER3 474 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 NT5C1BQ96P26 610 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 FAM118BQ9BPY3 351 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 IKBKGQ9Y6K9 419 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 SYNGAP1Q96PV0 1343 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 PITPNM2Q9BZ72 1349 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 MYH6P13533 1939 aa13.51□□□□□ -0.25
MSH6-213ENST00000614496 EIF4E1BA6NMX2 242 aaKnown RBP13.5□□□□□ -0.25
MSH6-213ENST00000614496 M0R2N6 131 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 ATP2A1O14983 1001 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 CYP26A1O43174 497 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 MFAP3P55082 362 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 TMED2Q15363 201 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 LONRF1Q17RB8 773 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 AADACL2Q6P093 401 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 PADI6Q6TGC4 694 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 TMEM179Q6ZVK1 233 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 NCAPGQ9BPX3 1015 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 NUP85Q9BW27 656 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 DDX20Q9UHI6 824 aaKnown RBP13.5□□□□□ -0.25
MSH6-213ENST00000614496 ANAPC5Q9UJX4 755 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 CCPG1Q9ULG6 757 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 SLMAPQ14BN4 828 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 TRIM68Q6AZZ1 485 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 RINT1Q6NUQ1 792 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 ACTRT1Q8TDG2 376 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 ARHGEF2Q92974 986 aaKnown RBP13.5□□□□□ -0.25
MSH6-213ENST00000614496 ACCSQ96QU6 501 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 SYNCQ9H7C4 482 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 APEX2Q9UBZ4 518 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 ANAPC7Q9UJX3 599 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 SLC16A4O15374 487 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 HIP1RO75146 1068 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 VAMP7P51809 220 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 RWDD2BP57060 319 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 RHBDL3P58872 404 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 HHATQ5VTY9 493 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 RNF207Q6ZRF8 634 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 SRRM1Q8IYB3 904 aaKnown RBP13.5□□□□□ -0.25
MSH6-213ENST00000614496 ELMO3Q96BJ8 720 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 SH3GL2Q99962 352 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 LXNQ9BS40 222 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 WDR11Q9BZH6 1224 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 CNOT8Q9UFF9 292 aaKnown RBP13.5□□□□□ -0.25
MSH6-213ENST00000614496 EXOC7Q9UPT5 735 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 ZNF148Q9UQR1 794 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 PRELPP51888 382 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 ZNF131P52739 623 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 ZNF564Q8TBZ8 553 aaPredicted RBP13.5□□□□□ -0.25
MSH6-213ENST00000614496 GANQ9H2C0 597 aa13.5□□□□□ -0.25
MSH6-213ENST00000614496 PODXLO00592 558 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 NEBLO76041 1014 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 TRIM37O94972 964 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 COMTP21964 271 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 BYSLQ13895 437 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms