RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 POLR2DO15514 142 aaKnown RBP21.43■■□□□ 1.02
UPF1-209ENST00000600310 HIP1RO75146 1068 aa21.43■■□□□ 1.02
UPF1-209ENST00000600310 SRGAP2CP0DJJ0 459 aa21.43■■□□□ 1.02
UPF1-209ENST00000600310 PFKFB1P16118 471 aa21.43■■□□□ 1.02
UPF1-209ENST00000600310 MAPK7Q13164 816 aa21.43■■□□□ 1.02
UPF1-209ENST00000600310 CAPSQ13938 189 aa21.43■■□□□ 1.02
UPF1-209ENST00000600310 SV2BQ7L1I2 683 aa21.43■■□□□ 1.02
UPF1-209ENST00000600310 IFNLR1Q8IU57 520 aaPredicted RBP21.43■■□□□ 1.02
UPF1-209ENST00000600310 DAW1Q8N136 415 aa21.43■■□□□ 1.02
UPF1-209ENST00000600310 APBB2Q92870 758 aa21.43■■□□□ 1.02
UPF1-209ENST00000600310 A0A1B0GVL5 298 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 RBAK-RBAKDNI3L0D1 243 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 GPR182O15218 404 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 RPS6KA5O75582 802 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 ACTN1P12814 892 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 CD52P31358 61 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 PTENP60484 403 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 PPP2R5AQ15172 486 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 TCTN1Q2MV58 587 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 ODR4Q5SWX8 454 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 C9orf50Q5SZB4 431 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 CLEC17AQ6ZS10 378 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 FAM43BQ6ZT52 329 aaPredicted RBP21.42■■□□□ 1.02
UPF1-209ENST00000600310 SRGAP1Q7Z6B7 1085 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 FAM228AQ86W67 206 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 LOXHD1Q8IVV2 1947 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 FSIP1Q8NA03 581 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 BSNDQ8WZ55 320 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 HERVK_113Q902F9 699 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 MRPS27Q92552 414 aaKnown RBP21.42■■□□□ 1.02
UPF1-209ENST00000600310 DRC1Q96MC2 740 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 INO80BQ9C086 356 aaPredicted RBP21.42■■□□□ 1.02
UPF1-209ENST00000600310 C17orf75Q9HAS0 396 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 POLD4Q9HCU8 107 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 ERVK-5Q9HDB9 667 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 PADI3Q9ULW8 664 aa21.42■■□□□ 1.02
UPF1-209ENST00000600310 SCN5AQ14524 2016 aa21.41■■□□□ 1.02
UPF1-209ENST00000600310 NPHP3-ACAD11A0A0J9YXS1 232 aa21.41■■□□□ 1.02
UPF1-209ENST00000600310 ABHD14A-ACY1A0A1B0GW23 586 aa21.41■■□□□ 1.02
UPF1-209ENST00000600310 GOLGA6L4A6NEF3 574 aa21.41■■□□□ 1.02
UPF1-209ENST00000600310 NAMPTP43490 491 aa21.41■■□□□ 1.02
UPF1-209ENST00000600310 PHKA2P46019 1235 aa21.41■■□□□ 1.02
UPF1-209ENST00000600310 PAK2Q13177 524 aa21.41■■□□□ 1.02
UPF1-209ENST00000600310 SHHQ15465 462 aa21.41■■□□□ 1.02
UPF1-209ENST00000600310 OTOP2Q7RTS6 562 aa21.41■■□□□ 1.02
UPF1-209ENST00000600310 TMEM87AQ8NBN3 555 aa21.41■■□□□ 1.02
UPF1-209ENST00000600310 IFT74Q96LB3 600 aa21.41■■□□□ 1.02
UPF1-209ENST00000600310 NFKBIZQ9BYH8 718 aa21.41■■□□□ 1.02
UPF1-209ENST00000600310 TNMDQ9H2S6 317 aa21.41■■□□□ 1.02
UPF1-209ENST00000600310 MAGEF1Q9HAY2 307 aa21.41■■□□□ 1.02
UPF1-209ENST00000600310 KBTBD4Q9NVX7 518 aa21.41■■□□□ 1.02
UPF1-209ENST00000600310 ODF2LQ9ULJ1 636 aa21.41■■□□□ 1.02
UPF1-209ENST00000600310 ST3GAL5Q9UNP4 418 aa21.41■■□□□ 1.02
UPF1-209ENST00000600310 MYMKA6NI61 221 aa21.4■■□□□ 1.02
UPF1-209ENST00000600310 BAIAP3O94812 1187 aa21.4■■□□□ 1.02
UPF1-209ENST00000600310 SYKP43405 635 aa21.4■■□□□ 1.02
UPF1-209ENST00000600310 NDUFA8P51970 172 aa21.4■■□□□ 1.02
UPF1-209ENST00000600310 RAD51AP2Q09MP3 1159 aa21.4■■□□□ 1.02
UPF1-209ENST00000600310 NFX1Q12986 1120 aaKnown RBP21.4■■□□□ 1.02
UPF1-209ENST00000600310 GIT2Q14161 759 aa21.4■■□□□ 1.02
UPF1-209ENST00000600310 IKBKEQ14164 716 aa21.4■■□□□ 1.02
UPF1-209ENST00000600310 RASIP1Q5U651 963 aa21.4■■□□□ 1.02
UPF1-209ENST00000600310 REEP2Q9BRK0 252 aa21.4■■□□□ 1.02
UPF1-209ENST00000600310 USP25Q9UHP3 1055 aa21.4■■□□□ 1.02
UPF1-209ENST00000600310 SIP14410 1827 aa21.39■■□□□ 1.02
UPF1-209ENST00000600310 LRRIQ4A6NIV6 560 aa21.39■■□□□ 1.01
UPF1-209ENST00000600310 SFI1A8K8P3 1242 aa21.39■■□□□ 1.01
UPF1-209ENST00000600310 EFCAB14O75071 495 aa21.39■■□□□ 1.01
UPF1-209ENST00000600310 KRT18P05783 430 aaKnown RBP21.39■■□□□ 1.01
UPF1-209ENST00000600310 TPRNQ4KMQ1 711 aa21.39■■□□□ 1.01
UPF1-209ENST00000600310 TDHQ8IZJ6 230 aa21.39■■□□□ 1.01
UPF1-209ENST00000600310 TET1Q8NFU7 2136 aa21.39■■□□□ 1.01
UPF1-209ENST00000600310 DDX12PQ92771 950 aa21.39■■□□□ 1.01
UPF1-209ENST00000600310 LRRC27Q9C0I9 530 aa21.39■■□□□ 1.01
UPF1-209ENST00000600310 MTIF3Q9H2K0 278 aaKnown RBP21.39■■□□□ 1.01
UPF1-209ENST00000600310 GOLPH3LQ9H4A5 285 aa21.39■■□□□ 1.01
UPF1-209ENST00000600310 KCNG1Q9UIX4 513 aa21.39■■□□□ 1.01
UPF1-209ENST00000600310 CSDE1O75534 798 aaKnown RBP21.38■■□□□ 1.01
UPF1-209ENST00000600310 SLFN14P0C7P3 912 aa21.38■■□□□ 1.01
UPF1-209ENST00000600310 PLS3P13797 630 aa21.38■■□□□ 1.01
UPF1-209ENST00000600310 SFPQP23246 707 aaKnown RBP eCLIP21.38■■□□□ 1.01
UPF1-209ENST00000600310 ZNF131P52739 623 aa21.38■■□□□ 1.01
UPF1-209ENST00000600310 PEX3P56589 373 aa21.38■■□□□ 1.01
UPF1-209ENST00000600310 AMPD3Q01432 767 aa21.38■■□□□ 1.01
UPF1-209ENST00000600310 CACNB1Q02641 598 aaPredicted RBP21.38■■□□□ 1.01
UPF1-209ENST00000600310 DMP1Q13316 513 aaPredicted RBP21.38■■□□□ 1.01
UPF1-209ENST00000600310 CDCA2Q69YH5 1023 aaPredicted RBP21.38■■□□□ 1.01
UPF1-209ENST00000600310 DEPTORQ8TB45 409 aa21.38■■□□□ 1.01
UPF1-209ENST00000600310 RNPC3Q96LT9 517 aaKnown RBP21.38■■□□□ 1.01
UPF1-209ENST00000600310 NTPCRQ9BSD7 190 aaKnown RBP21.38■■□□□ 1.01
UPF1-209ENST00000600310 FTHL17Q9BXU8 183 aa21.38■■□□□ 1.01
UPF1-209ENST00000600310 TMX1Q9H3N1 280 aa21.38■■□□□ 1.01
UPF1-209ENST00000600310 MINDY3Q9H8M7 445 aa21.38■■□□□ 1.01
UPF1-209ENST00000600310 SERTAD1Q9UHV2 236 aa21.38■■□□□ 1.01
UPF1-209ENST00000600310 TRIOBPQ9H2D6 2365 aa21.37■■□□□ 1.01
UPF1-209ENST00000600310 A0A1W2PPC1 479 aa21.37■■□□□ 1.01
UPF1-209ENST00000600310 ACTN4O43707 911 aaKnown RBP21.37■■□□□ 1.01
UPF1-209ENST00000600310 FAM13AO94988 1023 aa21.37■■□□□ 1.01
UPF1-209ENST00000600310 FGFR4P22455 802 aa21.37■■□□□ 1.01
UPF1-209ENST00000600310 NPTX2P47972 431 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 190.5 ms