RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 MTHFRP42898 656 aa6.92□□□□□ -1.3
VRK3-220ENST00000600259 BCAR1P56945 870 aa6.92□□□□□ -1.3
VRK3-220ENST00000600259 SMC1AQ14683 1233 aaKnown RBP6.92□□□□□ -1.3
VRK3-220ENST00000600259 UGCGQ16739 394 aa6.92□□□□□ -1.3
VRK3-220ENST00000600259 RTN1Q16799 776 aa6.92□□□□□ -1.3
VRK3-220ENST00000600259 ASTLQ6HA08 431 aaPredicted RBP6.92□□□□□ -1.3
VRK3-220ENST00000600259 KIAA1841Q6NSI8 718 aa6.92□□□□□ -1.3
VRK3-220ENST00000600259 CES5AQ6NT32 575 aa6.92□□□□□ -1.3
VRK3-220ENST00000600259 SYNE3Q6ZMZ3 975 aa6.92□□□□□ -1.3
VRK3-220ENST00000600259 TRMT1LQ7Z2T5 733 aaKnown RBP6.92□□□□□ -1.3
VRK3-220ENST00000600259 DDX53Q86TM3 631 aaKnown RBP6.92□□□□□ -1.3
VRK3-220ENST00000600259 SMAP1Q8IYB5 467 aaPredicted RBP6.92□□□□□ -1.3
VRK3-220ENST00000600259 LRRC43Q8N309 656 aa6.92□□□□□ -1.3
VRK3-220ENST00000600259 HELQQ8TDG4 1101 aa6.92□□□□□ -1.3
VRK3-220ENST00000600259 AUTS2Q8WXX7 1259 aa6.92□□□□□ -1.3
VRK3-220ENST00000600259 NRDE2Q9H7Z3 1164 aa6.92□□□□□ -1.3
VRK3-220ENST00000600259 EVPLQ92817 2033 aa6.92□□□□□ -1.3
VRK3-220ENST00000600259 DCHS1Q96JQ0 3298 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 MSH4O15457 936 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 OFD1O75665 1012 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 EFEMP2O95967 443 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 OATP04181 439 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 PHKA2P46019 1235 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 METAP2P50579 478 aaKnown RBP eCLIP6.91□□□□□ -1.3
VRK3-220ENST00000600259 AFF1P51825 1210 aaKnown RBP6.91□□□□□ -1.3
VRK3-220ENST00000600259 RCAN1P53805 252 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 POLGP54098 1239 aaPredicted RBP6.91□□□□□ -1.3
VRK3-220ENST00000600259 FOXK2Q01167 660 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 MTMR3Q13615 1198 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 NTRK3Q16288 839 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 PRR16Q569H4 304 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 ATAT1Q5SQI0 421 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 RARS2Q5T160 578 aaKnown RBP6.91□□□□□ -1.3
VRK3-220ENST00000600259 CWF19L1Q69YN2 538 aaKnown RBP6.91□□□□□ -1.3
VRK3-220ENST00000600259 GPR149Q86SP6 731 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 CKAP2LQ8IYA6 745 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 VPS52Q8N1B4 723 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 PLCD3Q8N3E9 789 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 RNF169Q8NCN4 708 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 SLC5A5Q92911 643 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 KCNB2Q92953 911 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 IGSF21Q96ID5 467 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 FAM167AQ96KS9 214 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 NIFKQ9BYG3 293 aaKnown RBP6.91□□□□□ -1.3
VRK3-220ENST00000600259 UNC45AQ9H3U1 944 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 CHST12Q9NRB3 414 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 TSHZ2Q9NRE2 1034 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 DISC1Q9NRI5 854 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 NRBP2Q9NSY0 501 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 CEP131Q9UPN4 1083 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 AKT3Q9Y243 479 aa6.91□□□□□ -1.3
VRK3-220ENST00000600259 A0A087WZ62 844 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 KLF18A0A0U1RQI7 1052 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 TMEM150BA6NC51 233 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 GOLGA8AA7E2F4 631 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 GOLGA8BA8MQT2 603 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 WDR64B1ANS9 1081 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 PRPF3O43395 683 aaKnown RBP6.9□□□□□ -1.3
VRK3-220ENST00000600259 N4BP1O75113 896 aaKnown RBP6.9□□□□□ -1.3
VRK3-220ENST00000600259 PSMD10O75832 226 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 DDHD2O94830 711 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 PAPLNO95428 1278 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 CPA1P15085 419 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 TMOD1P28289 359 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 SLC11A1P49279 550 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 ALDH7A1P49419 539 aaKnown RBP6.9□□□□□ -1.3
VRK3-220ENST00000600259 USP11P51784 963 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 SETQ01105 290 aaPredicted RBP6.9□□□□□ -1.3
VRK3-220ENST00000600259 PRKCEQ02156 737 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 PTPN14Q15678 1187 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 MCTP2Q6DN12 878 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 POTEGQ6S5H5 508 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 TMC5Q6UXY8 1006 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 AGMOQ6ZNB7 445 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 FRMD5Q7Z6J6 570 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 MRPL10Q7Z7H8 261 aaKnown RBP6.9□□□□□ -1.3
VRK3-220ENST00000600259 ZBTB33Q86T24 672 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 ZNF280BQ86YH2 543 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 ABI1Q8IZP0 508 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 REXO1Q8N1G1 1221 aaKnown RBP6.9□□□□□ -1.3
VRK3-220ENST00000600259 LPPQ93052 612 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 GJA10Q969M2 543 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 TMEM169Q96HH4 297 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 KLHL5Q96PQ7 755 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 MAP7D2Q96T17 732 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 RIT2Q99578 217 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 FDXACB1Q9BRP7 624 aaPredicted RBP6.9□□□□□ -1.3
VRK3-220ENST00000600259 AGXT2Q9BYV1 514 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 ANO2Q9NQ90 1003 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 CYP26B1Q9NR63 512 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 TBC1D13Q9NVG8 400 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 DZANK1Q9NVP4 752 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 DACT1Q9NYF0 836 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 DNAJB4Q9UDY4 337 aa6.9□□□□□ -1.3
VRK3-220ENST00000600259 GPR179Q6PRD1 2367 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 CYP3A7-CYP3A51PA0A087WV96 503 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.89□□□□□ -1.31
VRK3-220ENST00000600259 M0R2N6 131 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 MAFO75444 373 aaPredicted RBP6.89□□□□□ -1.31
VRK3-220ENST00000600259 CNPP09543 421 aaKnown RBP6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms