RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 BRWD1Q9NSI6 2320 aa17.97■□□□□ 0.47
TRIM28-213ENST00000598355 DENND3A2RUS2 1198 aa17.96■□□□□ 0.47
TRIM28-213ENST00000598355 STAG3L1P0CL83 205 aa17.96■□□□□ 0.47
TRIM28-213ENST00000598355 SFPQP23246 707 aaKnown RBP eCLIP17.96■□□□□ 0.47
TRIM28-213ENST00000598355 MXD4Q14582 209 aaPredicted RBP17.96■□□□□ 0.47
TRIM28-213ENST00000598355 SRGAP1Q7Z6B7 1085 aa17.96■□□□□ 0.47
TRIM28-213ENST00000598355 HSCBQ8IWL3 235 aa17.96■□□□□ 0.47
TRIM28-213ENST00000598355 CMTR2Q8IYT2 770 aaKnown RBP17.96■□□□□ 0.47
TRIM28-213ENST00000598355 MAFAQ8NHW3 353 aaPredicted RBP17.96■□□□□ 0.47
TRIM28-213ENST00000598355 SNX29Q8TEQ0 813 aa17.96■□□□□ 0.47
TRIM28-213ENST00000598355 SCLT1Q96NL6 688 aa17.96■□□□□ 0.47
TRIM28-213ENST00000598355 NFKBIZQ9BYH8 718 aa17.96■□□□□ 0.47
TRIM28-213ENST00000598355 INO80BQ9C086 356 aaPredicted RBP17.96■□□□□ 0.47
TRIM28-213ENST00000598355 MORC2Q9Y6X9 1032 aaPredicted RBP17.96■□□□□ 0.47
TRIM28-213ENST00000598355 PP2D1A8MPX8 630 aa17.95■□□□□ 0.46
TRIM28-213ENST00000598355 C5orf67F2Z3F1 127 aa17.95■□□□□ 0.46
TRIM28-213ENST00000598355 USO1O60763 962 aaKnown RBP17.95■□□□□ 0.46
TRIM28-213ENST00000598355 FGFR4P22455 802 aa17.95■□□□□ 0.46
TRIM28-213ENST00000598355 CCT6AP40227 531 aaKnown RBP17.95■□□□□ 0.46
TRIM28-213ENST00000598355 CAPSQ13938 189 aa17.95■□□□□ 0.46
TRIM28-213ENST00000598355 MCPH1Q8NEM0 835 aa17.95■□□□□ 0.46
TRIM28-213ENST00000598355 ASAP3Q8TDY4 903 aa17.95■□□□□ 0.46
TRIM28-213ENST00000598355 ARNTL2Q8WYA1 636 aa17.95■□□□□ 0.46
TRIM28-213ENST00000598355 MINDY3Q9H8M7 445 aa17.95■□□□□ 0.46
TRIM28-213ENST00000598355 CHST12Q9NRB3 414 aa17.95■□□□□ 0.46
TRIM28-213ENST00000598355 AGPAT5Q9NUQ2 364 aa17.95■□□□□ 0.46
TRIM28-213ENST00000598355 RNF19AQ9NV58 838 aa17.95■□□□□ 0.46
TRIM28-213ENST00000598355 RNF216Q9NWF9 866 aaPredicted RBP17.95■□□□□ 0.46
TRIM28-213ENST00000598355 TMEM161AQ9NX61 479 aa17.95■□□□□ 0.46
TRIM28-213ENST00000598355 MYO7AQ13402 2215 aa17.94■□□□□ 0.46
TRIM28-213ENST00000598355 A0A087WWV3 80 aa17.94■□□□□ 0.46
TRIM28-213ENST00000598355 STX6O43752 255 aa17.94■□□□□ 0.46
TRIM28-213ENST00000598355 CSDE1O75534 798 aaKnown RBP17.94■□□□□ 0.46
TRIM28-213ENST00000598355 ATF7P17544 494 aaPredicted RBP17.94■□□□□ 0.46
TRIM28-213ENST00000598355 GLRA2P23416 452 aa17.94■□□□□ 0.46
TRIM28-213ENST00000598355 PTENP60484 403 aa17.94■□□□□ 0.46
TRIM28-213ENST00000598355 PTPAQ15257 358 aa17.94■□□□□ 0.46
TRIM28-213ENST00000598355 PCBP1Q15365 356 aaKnown RBP eCLIP17.94■□□□□ 0.461e-10■■■■□ 24
TRIM28-213ENST00000598355 ZNF598Q86UK7 904 aaKnown RBP17.94■□□□□ 0.46
TRIM28-213ENST00000598355 KCTD17Q8N5Z5 321 aa17.94■□□□□ 0.46
TRIM28-213ENST00000598355 RNF149Q8NC42 400 aa17.94■□□□□ 0.46
TRIM28-213ENST00000598355 CCDC43Q96MW1 224 aaKnown RBP17.94■□□□□ 0.46
TRIM28-213ENST00000598355 C17orf80Q9BSJ5 609 aa17.94■□□□□ 0.46
TRIM28-213ENST00000598355 CERS4Q9HA82 394 aa17.94■□□□□ 0.46
TRIM28-213ENST00000598355 DDX19AQ9NUU7 478 aaKnown RBP17.94■□□□□ 0.46
TRIM28-213ENST00000598355 A0A0U1RQF3 1178 aa17.93■□□□□ 0.46
TRIM28-213ENST00000598355 RFXAPO00287 272 aa17.93■□□□□ 0.46
TRIM28-213ENST00000598355 SLC26A4O43511 780 aa17.93■□□□□ 0.46
TRIM28-213ENST00000598355 CYP11B2P19099 503 aa17.93■□□□□ 0.46
TRIM28-213ENST00000598355 GRB10Q13322 594 aa17.93■□□□□ 0.46
TRIM28-213ENST00000598355 SF3A1Q15459 793 aaKnown RBP17.93■□□□□ 0.46
TRIM28-213ENST00000598355 EPC2Q52LR7 807 aa17.93■□□□□ 0.46
TRIM28-213ENST00000598355 KRT79Q5XKE5 535 aa17.93■□□□□ 0.46
TRIM28-213ENST00000598355 PADI6Q6TGC4 694 aa17.93■□□□□ 0.46
TRIM28-213ENST00000598355 ECHDC2Q86YB7 292 aa17.93■□□□□ 0.46
TRIM28-213ENST00000598355 FIBCD1Q8N539 461 aa17.93■□□□□ 0.46
TRIM28-213ENST00000598355 GDPD5Q8WTR4 605 aa17.93■□□□□ 0.46
TRIM28-213ENST00000598355 AK8Q96MA6 479 aa17.93■□□□□ 0.46
TRIM28-213ENST00000598355 POLR3FQ9H1D9 316 aaPredicted RBP17.93■□□□□ 0.46
TRIM28-213ENST00000598355 DACT1Q9NYF0 836 aa17.93■□□□□ 0.46
TRIM28-213ENST00000598355 LMCD1Q9NZU5 365 aa17.93■□□□□ 0.46
TRIM28-213ENST00000598355 KIAA1024Q9UPX6 916 aa17.93■□□□□ 0.46
TRIM28-213ENST00000598355 MTCH2Q9Y6C9 303 aa17.93■□□□□ 0.46
TRIM28-213ENST00000598355 ARHGEF35A5YM69 484 aa17.92■□□□□ 0.46
TRIM28-213ENST00000598355 VWA3AA6NCI4 1184 aa17.92■□□□□ 0.46
TRIM28-213ENST00000598355 EYA4O95677 639 aa17.92■□□□□ 0.46
TRIM28-213ENST00000598355 ZSCAN20P17040 1043 aaPredicted RBP17.92■□□□□ 0.46
TRIM28-213ENST00000598355 CDC25AP30304 524 aa17.92■□□□□ 0.46
TRIM28-213ENST00000598355 PHKA2P46019 1235 aa17.92■□□□□ 0.46
TRIM28-213ENST00000598355 AMHR2Q16671 573 aa17.92■□□□□ 0.46
TRIM28-213ENST00000598355 TMEM119Q4V9L6 283 aa17.92■□□□□ 0.46
TRIM28-213ENST00000598355 CDCA2Q69YH5 1023 aaPredicted RBP17.92■□□□□ 0.46
TRIM28-213ENST00000598355 KCNK18Q7Z418 384 aa17.92■□□□□ 0.46
TRIM28-213ENST00000598355 TMEM192Q8IY95 271 aa17.92■□□□□ 0.46
TRIM28-213ENST00000598355 FBXO22Q8NEZ5 403 aa17.92■□□□□ 0.46
TRIM28-213ENST00000598355 BHMT2Q9H2M3 363 aa17.92■□□□□ 0.46
TRIM28-213ENST00000598355 ZSCAN16Q9H4T2 348 aaPredicted RBP17.92■□□□□ 0.46
TRIM28-213ENST00000598355 GPRC5CQ9NQ84 441 aa17.92■□□□□ 0.46
TRIM28-213ENST00000598355 FOXD4L1Q9NU39 408 aa17.92■□□□□ 0.46
TRIM28-213ENST00000598355 RWDD3Q9Y3V2 267 aa17.92■□□□□ 0.46
TRIM28-213ENST00000598355 PCDHB7Q9Y5E2 793 aa17.92■□□□□ 0.46
TRIM28-213ENST00000598355 MRPL42Q9Y6G3 142 aaKnown RBP17.92■□□□□ 0.46
TRIM28-213ENST00000598355 H3BNC9 293 aa17.91■□□□□ 0.46
TRIM28-213ENST00000598355 SRGAP2CP0DJJ0 459 aa17.91■□□□□ 0.46
TRIM28-213ENST00000598355 PDIA4P13667 645 aaKnown RBP17.91■□□□□ 0.46
TRIM28-213ENST00000598355 HOXA11P31270 313 aaPredicted RBP17.91■□□□□ 0.46
TRIM28-213ENST00000598355 GATMP50440 423 aa17.91■□□□□ 0.46
TRIM28-213ENST00000598355 MBTD1Q05BQ5 628 aa17.91■□□□□ 0.46
TRIM28-213ENST00000598355 TFDP1Q14186 410 aa17.91■□□□□ 0.46
TRIM28-213ENST00000598355 BTG3Q14201 252 aaPredicted RBP17.91■□□□□ 0.46
TRIM28-213ENST00000598355 CATSPER4Q7RTX7 472 aa17.91■□□□□ 0.46
TRIM28-213ENST00000598355 PNMA5Q96PV4 448 aa17.91■□□□□ 0.46
TRIM28-213ENST00000598355 LRFN2Q9ULH4 789 aa17.91■□□□□ 0.46
TRIM28-213ENST00000598355 PIN4Q9Y237 131 aaKnown RBP17.91■□□□□ 0.46
TRIM28-213ENST00000598355 TDRD15B5MCY1 1934 aaKnown RBP17.9■□□□□ 0.46
TRIM28-213ENST00000598355 HOXA2O43364 376 aa17.9■□□□□ 0.46
TRIM28-213ENST00000598355 ZNF623O75123 536 aa17.9■□□□□ 0.46
TRIM28-213ENST00000598355 EOMESO95936 686 aa17.9■□□□□ 0.46
TRIM28-213ENST00000598355 RB1P06400 928 aa17.9■□□□□ 0.46
TRIM28-213ENST00000598355 LONP1P36776 959 aaKnown RBP17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms