RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 RGS16O15492 202 aaPredicted RBP16.51■□□□□ 0.23
UPF1-204ENST00000596842 SNHG28P0DPA3 235 aa16.51■□□□□ 0.23
UPF1-204ENST00000596842 EZRP15311 586 aaKnown RBP16.51■□□□□ 0.23
UPF1-204ENST00000596842 SOX5P35711 763 aa16.51■□□□□ 0.23
UPF1-204ENST00000596842 PPP1R7Q15435 360 aa16.51■□□□□ 0.23
UPF1-204ENST00000596842 TRIP13Q15645 432 aaPredicted RBP16.51■□□□□ 0.23
UPF1-204ENST00000596842 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.51■□□□□ 0.23
UPF1-204ENST00000596842 DLEC1Q9Y238 1755 aa16.51■□□□□ 0.23
UPF1-204ENST00000596842 A0A1B0GUA9 196 aa16.51■□□□□ 0.23
UPF1-204ENST00000596842 ENO4A6NNW6 628 aa16.51■□□□□ 0.23
UPF1-204ENST00000596842 GCLMP48507 274 aa16.51■□□□□ 0.23
UPF1-204ENST00000596842 SLC29A2Q14542 456 aa16.51■□□□□ 0.23
UPF1-204ENST00000596842 C10orf76Q5T2E6 689 aa16.51■□□□□ 0.23
UPF1-204ENST00000596842 ELAC2Q9BQ52 826 aaKnown RBP16.51■□□□□ 0.23
UPF1-204ENST00000596842 DBR1Q9UK59 544 aaKnown RBP16.51■□□□□ 0.23
UPF1-204ENST00000596842 GOLGA8IPA6NC78 632 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 GOLGA8JA6NMD2 632 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 FOXN3O00409 490 aaPredicted RBP16.5■□□□□ 0.23
UPF1-204ENST00000596842 MMEP08473 750 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 CHN1P15882 459 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 IFI35P80217 286 aaPredicted RBP16.5■□□□□ 0.23
UPF1-204ENST00000596842 ARMC3Q5W041 872 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 RINT1Q6NUQ1 792 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 CPNE8Q86YQ8 564 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 TCP11Q8WWU5 503 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 KRT35Q92764 455 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 LAMB1P07942 1786 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 F8VZ95 297 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 SPOPO43791 374 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 FMO5P49326 533 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 MYL7Q01449 175 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 ANKRD42Q8N9B4 389 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 RAB17Q9H0T7 212 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 G3BP2Q9UN86 482 aaKnown RBP16.5■□□□□ 0.23
UPF1-204ENST00000596842 TRAF3IP3Q9Y228 551 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 FOXO6A8MYZ6 492 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 DNM1LO00429 736 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 CLTAP09496 248 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 PPP1R18Q6NYC8 613 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 ALG3Q92685 438 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 OSBPL7Q9BZF2 842 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 SIX2Q9NPC8 291 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 TMEM59LQ9UK28 342 aa16.5■□□□□ 0.23
UPF1-204ENST00000596842 ATF5Q9Y2D1 282 aaPredicted RBP16.5■□□□□ 0.23
UPF1-204ENST00000596842 TGFB1I1O43294 461 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 GH2P01242 217 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 GJC1P36383 396 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 MSL1Q68DK7 614 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 HIBCHQ6NVY1 386 aaPredicted RBP16.49■□□□□ 0.23
UPF1-204ENST00000596842 CD302Q8IX05 232 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 RFFLQ8WZ73 363 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 CCDC127Q96BQ5 260 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 PARVGQ9HBI0 331 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 FAM114A2Q9NRY5 505 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 H0YGN5 161 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 PPEF1O14829 653 aaPredicted RBP16.49■□□□□ 0.23
UPF1-204ENST00000596842 GAS7O60861 476 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 ACSL3O95573 720 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 FTLP02792 175 aaPredicted RBP16.49■□□□□ 0.23
UPF1-204ENST00000596842 RC3H1Q5TC82 1133 aaKnown RBP16.49■□□□□ 0.23
UPF1-204ENST00000596842 SEMA4AQ9H3S1 761 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 KCNK9Q9NPC2 374 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 SUCLA2Q9P2R7 463 aaPredicted RBP16.49■□□□□ 0.23
UPF1-204ENST00000596842 SWAP70Q9UH65 585 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 NFS1Q9Y697 457 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 MYH7BA7E2Y1 1941 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 GAKO14976 1311 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 PITPNM2Q9BZ72 1349 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 TRAPPC3O43617 180 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 BIRC3Q13489 604 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 PPM1KQ8N3J5 372 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 ETNPPLQ8TBG4 499 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 EPS8L3Q8TE67 593 aaKnown RBP16.49■□□□□ 0.23
UPF1-204ENST00000596842 CEP89Q96ST8 783 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 INTS2Q9H0H0 1204 aaKnown RBP16.49■□□□□ 0.23
UPF1-204ENST00000596842 ALG6Q9Y672 507 aa16.49■□□□□ 0.23
UPF1-204ENST00000596842 NDUFB10O96000 172 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 LMNB1P20700 586 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 FNTAP49354 379 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 NT5C2P49902 561 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 PMS2P54278 862 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 MARSP56192 900 aaKnown RBP16.48■□□□□ 0.23
UPF1-204ENST00000596842 NEDD9Q14511 834 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 ZKSCAN8Q15776 578 aaPredicted RBP16.48■□□□□ 0.23
UPF1-204ENST00000596842 ZFYVE27Q5T4F4 411 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 DCAF12L1Q5VU92 463 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 SUGP1Q8IWZ8 645 aaKnown RBP16.48■□□□□ 0.23
UPF1-204ENST00000596842 NEK9Q8TD19 979 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 KAT5Q92993 513 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 PRMT1Q99873 361 aaKnown RBP16.48■□□□□ 0.23
UPF1-204ENST00000596842 VCPKMTQ9H867 229 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 CALCAP01258 141 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 MMP14P50281 582 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 BARGINQ6ZT62 677 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 SPATS2Q86XZ4 545 aaKnown RBP16.48■□□□□ 0.23
UPF1-204ENST00000596842 JAMLQ86YT9 394 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 HVCN1Q96D96 273 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 NAP1L4Q99733 375 aaKnown RBP16.48■□□□□ 0.23
UPF1-204ENST00000596842 DNAJC18Q9H819 358 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 INTS9Q9NV88 658 aaKnown RBP16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms