RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 POF1BQ8WVV4 589 aa14.6□□□□□ -0.07
LIG1-212ENST00000596549 SLC7A3Q8WY07 619 aa14.6□□□□□ -0.07
LIG1-212ENST00000596549 GCOM2Q9BZD3 368 aaPredicted RBP14.6□□□□□ -0.07
LIG1-212ENST00000596549 ZSWIM4Q9H7M6 989 aa14.6□□□□□ -0.07
LIG1-212ENST00000596549 XPNPEP1Q9NQW7 623 aa14.6□□□□□ -0.07
LIG1-212ENST00000596549 COL4A3BPQ9Y5P4 624 aa14.6□□□□□ -0.07
LIG1-212ENST00000596549 A0A0U1RQF3 1178 aa14.59□□□□□ -0.07
LIG1-212ENST00000596549 H3BQ06 376 aaPredicted RBP14.59□□□□□ -0.07
LIG1-212ENST00000596549 TBX10O75333 385 aa14.59□□□□□ -0.07
LIG1-212ENST00000596549 CD2BP2O95400 341 aaKnown RBP14.59□□□□□ -0.07
LIG1-212ENST00000596549 ZSCAN20P17040 1043 aaPredicted RBP14.59□□□□□ -0.07
LIG1-212ENST00000596549 SFPQP23246 707 aaKnown RBP eCLIP14.59□□□□□ -0.07
LIG1-212ENST00000596549 MCM7P33993 719 aa14.59□□□□□ -0.07
LIG1-212ENST00000596549 LTBRP36941 435 aa14.59□□□□□ -0.07
LIG1-212ENST00000596549 RFC5P40937 340 aa14.59□□□□□ -0.07
LIG1-212ENST00000596549 TXKP42681 527 aa14.59□□□□□ -0.07
LIG1-212ENST00000596549 DNM2P50570 870 aa14.59□□□□□ -0.07
LIG1-212ENST00000596549 DLX2Q07687 328 aaPredicted RBP14.59□□□□□ -0.07
LIG1-212ENST00000596549 CTC1Q2NKJ3 1217 aa14.59□□□□□ -0.07
LIG1-212ENST00000596549 LRRC43Q8N309 656 aa14.59□□□□□ -0.07
LIG1-212ENST00000596549 TMEM143Q96AN5 459 aa14.59□□□□□ -0.07
LIG1-212ENST00000596549 ZSCAN31Q96LW9 406 aaPredicted RBP14.59□□□□□ -0.07
LIG1-212ENST00000596549 HSD17B14Q9BPX1 270 aa14.59□□□□□ -0.07
LIG1-212ENST00000596549 JPH2Q9BR39 696 aaPredicted RBP14.59□□□□□ -0.07
LIG1-212ENST00000596549 TMEM117Q9H0C3 514 aa14.59□□□□□ -0.07
LIG1-212ENST00000596549 MINDY3Q9H8M7 445 aa14.59□□□□□ -0.07
LIG1-212ENST00000596549 SH2B1Q9NRF2 756 aaPredicted RBP14.59□□□□□ -0.07
LIG1-212ENST00000596549 TYW1Q9NV66 732 aaKnown RBP14.59□□□□□ -0.07
LIG1-212ENST00000596549 PCDHA12Q9UN75 941 aa14.59□□□□□ -0.07
LIG1-212ENST00000596549 PIN4Q9Y237 131 aaKnown RBP14.59□□□□□ -0.07
LIG1-212ENST00000596549 PPME1Q9Y570 386 aa14.59□□□□□ -0.07
LIG1-212ENST00000596549 MEIS3P2A8K0S8 358 aa14.58□□□□□ -0.08
LIG1-212ENST00000596549 LINC01565O15544 149 aa14.58□□□□□ -0.08
LIG1-212ENST00000596549 LYPLA2O95372 231 aa14.58□□□□□ -0.08
LIG1-212ENST00000596549 PBX3P40426 434 aa14.58□□□□□ -0.08
LIG1-212ENST00000596549 HMGN5P82970 282 aaKnown RBP14.58□□□□□ -0.08
LIG1-212ENST00000596549 XKR9Q5GH70 373 aa14.58□□□□□ -0.08
LIG1-212ENST00000596549 TPH2Q8IWU9 490 aa14.58□□□□□ -0.08
LIG1-212ENST00000596549 FBXO18Q8NFZ0 1043 aa14.58□□□□□ -0.08
LIG1-212ENST00000596549 PSPC1Q8WXF1 523 aaKnown RBP14.58□□□□□ -0.08
LIG1-212ENST00000596549 MTRQ99707 1265 aa14.58□□□□□ -0.08
LIG1-212ENST00000596549 TRAIPQ9BWF2 469 aa14.58□□□□□ -0.08
LIG1-212ENST00000596549 FOXP1Q9H334 677 aaPredicted RBP14.58□□□□□ -0.08
LIG1-212ENST00000596549 AGPAT5Q9NUQ2 364 aa14.58□□□□□ -0.08
LIG1-212ENST00000596549 RNF216Q9NWF9 866 aaPredicted RBP14.58□□□□□ -0.08
LIG1-212ENST00000596549 CLDND1Q9NY35 253 aa14.58□□□□□ -0.08
LIG1-212ENST00000596549 HOXA2O43364 376 aa14.57□□□□□ -0.08
LIG1-212ENST00000596549 GAS2O43903 313 aaKnown RBP14.57□□□□□ -0.08
LIG1-212ENST00000596549 FGF18O76093 207 aa14.57□□□□□ -0.08
LIG1-212ENST00000596549 LAG3P18627 525 aa14.57□□□□□ -0.08
LIG1-212ENST00000596549 ATP2B1P20020 1258 aa14.57□□□□□ -0.08
LIG1-212ENST00000596549 PHKA2P46019 1235 aa14.57□□□□□ -0.08
LIG1-212ENST00000596549 RARRES1P49788 294 aa14.57□□□□□ -0.08
LIG1-212ENST00000596549 CDC42EP1Q00587 391 aa14.57□□□□□ -0.08
LIG1-212ENST00000596549 LAMTOR4Q0VGL1 99 aa14.57□□□□□ -0.08
LIG1-212ENST00000596549 NBR1Q14596 966 aa14.57□□□□□ -0.08
LIG1-212ENST00000596549 SAFBQ15424 915 aaKnown RBP eCLIP14.57□□□□□ -0.08
LIG1-212ENST00000596549 SPOUT1Q5T280 376 aaKnown RBP14.57□□□□□ -0.08
LIG1-212ENST00000596549 FERMT3Q86UX7 667 aa14.57□□□□□ -0.08
LIG1-212ENST00000596549 RNF169Q8NCN4 708 aa14.57□□□□□ -0.08
LIG1-212ENST00000596549 HELQQ8TDG4 1101 aa14.57□□□□□ -0.08
LIG1-212ENST00000596549 PRPF31Q8WWY3 499 aaKnown RBP14.57□□□□□ -0.08
LIG1-212ENST00000596549 KHSRPQ92945 711 aaKnown RBP eCLIP14.57□□□□□ -0.08
LIG1-212ENST00000596549 LPPQ93052 612 aa14.57□□□□□ -0.08
LIG1-212ENST00000596549 CD320Q9NPF0 282 aa14.57□□□□□ -0.08
LIG1-212ENST00000596549 CHST12Q9NRB3 414 aa14.57□□□□□ -0.08
LIG1-212ENST00000596549 DACT1Q9NYF0 836 aa14.57□□□□□ -0.08
LIG1-212ENST00000596549 C5orf42Q9H799 3197 aa14.56□□□□□ -0.08
LIG1-212ENST00000596549 MED24O75448 989 aa14.56□□□□□ -0.08
LIG1-212ENST00000596549 GLP2RO95838 553 aa14.56□□□□□ -0.08
LIG1-212ENST00000596549 OR52Z1P0C646 297 aa14.56□□□□□ -0.08
LIG1-212ENST00000596549 SPATA31C1P0DKV0 1188 aa14.56□□□□□ -0.08
LIG1-212ENST00000596549 RABEP1Q15276 862 aa14.56□□□□□ -0.08
LIG1-212ENST00000596549 TWF2Q6IBS0 349 aaKnown RBP14.56□□□□□ -0.08
LIG1-212ENST00000596549 PTCRAQ6ISU1 281 aaPredicted RBP14.56□□□□□ -0.08
LIG1-212ENST00000596549 OTUD6AQ7L8S5 288 aa14.56□□□□□ -0.08
LIG1-212ENST00000596549 CATSPER4Q7RTX7 472 aa14.56□□□□□ -0.08
LIG1-212ENST00000596549 NOSTRINQ8IVI9 506 aa14.56□□□□□ -0.08
LIG1-212ENST00000596549 FAM184AQ8NB25 1140 aa14.56□□□□□ -0.08
LIG1-212ENST00000596549 RNF149Q8NC42 400 aa14.56□□□□□ -0.08
LIG1-212ENST00000596549 INO80BQ9C086 356 aaPredicted RBP14.56□□□□□ -0.08
LIG1-212ENST00000596549 TLR9Q9NR96 1032 aa14.56□□□□□ -0.08
LIG1-212ENST00000596549 FAM105AQ9NUU6 356 aa14.56□□□□□ -0.08
LIG1-212ENST00000596549 PCDHB12Q9Y5F1 795 aa14.56□□□□□ -0.08
LIG1-212ENST00000596549 DENND4AQ7Z401 1863 aa14.55□□□□□ -0.08
LIG1-212ENST00000596549 A0A087WWV3 80 aa14.55□□□□□ -0.08
LIG1-212ENST00000596549 GRXCR2A6NFK2 248 aa14.55□□□□□ -0.08
LIG1-212ENST00000596549 FSCN2O14926 492 aa14.55□□□□□ -0.08
LIG1-212ENST00000596549 EOMESO95936 686 aa14.55□□□□□ -0.08
LIG1-212ENST00000596549 ERVFC1P60507 584 aa14.55□□□□□ -0.08
LIG1-212ENST00000596549 UBE3AQ05086 875 aa14.55□□□□□ -0.08
LIG1-212ENST00000596549 ORC2Q13416 577 aaPredicted RBP14.55□□□□□ -0.08
LIG1-212ENST00000596549 CAPSQ13938 189 aa14.55□□□□□ -0.08
LIG1-212ENST00000596549 ZNF174Q15697 407 aa14.55□□□□□ -0.08
LIG1-212ENST00000596549 LONRF3Q496Y0 759 aa14.55□□□□□ -0.08
LIG1-212ENST00000596549 TTC38Q5R3I4 469 aa14.55□□□□□ -0.08
LIG1-212ENST00000596549 UBXN11Q5T124 520 aa14.55□□□□□ -0.08
LIG1-212ENST00000596549 KCNT2Q6UVM3 1135 aa14.55□□□□□ -0.08
LIG1-212ENST00000596549 EP400NLQ6ZTU2 488 aa14.55□□□□□ -0.08
LIG1-212ENST00000596549 EXOC8Q8IYI6 725 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms