RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 PNMA5Q96PV4 448 aa12.32□□□□□ -0.44
LIG1-211ENST00000596457 POLR3FQ9H1D9 316 aaPredicted RBP12.32□□□□□ -0.44
LIG1-211ENST00000596457 TTYH1Q9H313 450 aaPredicted RBP12.32□□□□□ -0.44
LIG1-211ENST00000596457 ZNF576Q9H609 170 aa12.32□□□□□ -0.44
LIG1-211ENST00000596457 ERVK-5Q9HDB9 667 aa12.32□□□□□ -0.44
LIG1-211ENST00000596457 GPRC5CQ9NQ84 441 aa12.32□□□□□ -0.44
LIG1-211ENST00000596457 YBX2Q9Y2T7 364 aaKnown RBP12.32□□□□□ -0.44
LIG1-211ENST00000596457 CACNA1AO00555 2505 aa12.31□□□□□ -0.44
LIG1-211ENST00000596457 ASAP2O43150 1006 aa12.31□□□□□ -0.44
LIG1-211ENST00000596457 GAS2O43903 313 aaKnown RBP12.31□□□□□ -0.44
LIG1-211ENST00000596457 MGEA5O60502 916 aa12.31□□□□□ -0.44
LIG1-211ENST00000596457 EYA4O95677 639 aa12.31□□□□□ -0.44
LIG1-211ENST00000596457 DARSP14868 501 aaKnown RBP12.31□□□□□ -0.44
LIG1-211ENST00000596457 NCLP19338 710 aaKnown RBP12.31□□□□□ -0.44
LIG1-211ENST00000596457 EIF4BP23588 611 aaKnown RBP12.31□□□□□ -0.44
LIG1-211ENST00000596457 RAD51AP2Q09MP3 1159 aa12.31□□□□□ -0.44
LIG1-211ENST00000596457 SLC39A14Q15043 492 aa12.31□□□□□ -0.44
LIG1-211ENST00000596457 KARSQ15046 597 aaKnown RBP12.31□□□□□ -0.44
LIG1-211ENST00000596457 TPRNQ4KMQ1 711 aa12.31□□□□□ -0.44
LIG1-211ENST00000596457 KCNK18Q7Z418 384 aa12.31□□□□□ -0.44
LIG1-211ENST00000596457 RTN4RL1Q86UN2 441 aaPredicted RBP12.31□□□□□ -0.44
LIG1-211ENST00000596457 RNF149Q8NC42 400 aa12.31□□□□□ -0.44
LIG1-211ENST00000596457 ASAP3Q8TDY4 903 aa12.31□□□□□ -0.44
LIG1-211ENST00000596457 EPSTI1Q96J88 318 aa12.31□□□□□ -0.44
LIG1-211ENST00000596457 AK8Q96MA6 479 aa12.31□□□□□ -0.44
LIG1-211ENST00000596457 ADAM2Q99965 735 aa12.31□□□□□ -0.44
LIG1-211ENST00000596457 FTHL17Q9BXU8 183 aa12.31□□□□□ -0.44
LIG1-211ENST00000596457 PANK2Q9BZ23 570 aa12.31□□□□□ -0.44
LIG1-211ENST00000596457 INO80BQ9C086 356 aaPredicted RBP12.31□□□□□ -0.44
LIG1-211ENST00000596457 NT5C3AQ9H0P0 336 aa12.31□□□□□ -0.44
LIG1-211ENST00000596457 TMX1Q9H3N1 280 aa12.31□□□□□ -0.44
LIG1-211ENST00000596457 FBXO2Q9UK22 296 aaPredicted RBP12.31□□□□□ -0.44
LIG1-211ENST00000596457 LRFN2Q9ULH4 789 aa12.31□□□□□ -0.44
LIG1-211ENST00000596457 SRPRBQ9Y5M8 271 aaKnown RBP12.31□□□□□ -0.44
LIG1-211ENST00000596457 LRRIQ4A6NIV6 560 aa12.3□□□□□ -0.44
LIG1-211ENST00000596457 SPTLC2O15270 562 aa12.3□□□□□ -0.44
LIG1-211ENST00000596457 ZSCAN20P17040 1043 aaPredicted RBP12.3□□□□□ -0.44
LIG1-211ENST00000596457 ARL2P36404 184 aa12.3□□□□□ -0.44
LIG1-211ENST00000596457 NASPP49321 788 aaPredicted RBP12.3□□□□□ -0.44
LIG1-211ENST00000596457 DNM1Q05193 864 aaKnown RBP12.3□□□□□ -0.44
LIG1-211ENST00000596457 TFDP1Q14186 410 aa12.3□□□□□ -0.44
LIG1-211ENST00000596457 MXD4Q14582 209 aaPredicted RBP12.3□□□□□ -0.44
LIG1-211ENST00000596457 USP49Q70CQ1 688 aa12.3□□□□□ -0.44
LIG1-211ENST00000596457 CATSPER4Q7RTX7 472 aa12.3□□□□□ -0.44
LIG1-211ENST00000596457 ZNF410Q86VK4 478 aa12.3□□□□□ -0.44
LIG1-211ENST00000596457 ZNF710Q8N1W2 664 aa12.3□□□□□ -0.44
LIG1-211ENST00000596457 KRI1Q8N9T8 703 aaKnown RBP12.3□□□□□ -0.44
LIG1-211ENST00000596457 LINC00301Q8NCQ3 95 aa12.3□□□□□ -0.44
LIG1-211ENST00000596457 MCPH1Q8NEM0 835 aa12.3□□□□□ -0.44
LIG1-211ENST00000596457 MAFAQ8NHW3 353 aaPredicted RBP12.3□□□□□ -0.44
LIG1-211ENST00000596457 LINC01599Q8WXQ3 324 aa12.3□□□□□ -0.44
LIG1-211ENST00000596457 CERS4Q9HA82 394 aa12.3□□□□□ -0.44
LIG1-211ENST00000596457 SLC28A3Q9HAS3 691 aa12.3□□□□□ -0.44
LIG1-211ENST00000596457 ZDHHC9Q9Y397 364 aa12.3□□□□□ -0.44
LIG1-211ENST00000596457 PCDHA11Q9Y5I1 949 aa12.3□□□□□ -0.44
LIG1-211ENST00000596457 MYH11P35749 1972 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 BRD1O95696 1058 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 CA3P07451 260 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 PLA2G4BP0C869 781 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 FOSL2P15408 326 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 LIG1P18858 919 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 CYP11B2P19099 503 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 PLCG1P19174 1290 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 SFPQP23246 707 aaKnown RBP eCLIP12.29□□□□□ -0.44
LIG1-211ENST00000596457 GLRA2P23416 452 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 TXLNAP40222 546 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 PHKA2P46019 1235 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 CAPSQ13938 189 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 TMEM119Q4V9L6 283 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 HYIQ5T013 277 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 PPP2R2DQ66LE6 453 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 TOP1MTQ969P6 601 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 CHAMP1Q96JM3 812 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 YME1L1Q96TA2 773 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 GAS2L1Q99501 681 aaPredicted RBP12.29□□□□□ -0.44
LIG1-211ENST00000596457 IFT122Q9HBG6 1241 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 CCDC39Q9UFE4 941 aa12.29□□□□□ -0.44
LIG1-211ENST00000596457 NPHP3-ACAD11A0A0J9YXS1 232 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 LCHNA4D1U4 455 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 INO80B-WBP1J3KQ70 363 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 HIP1RO75146 1068 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 GJB5O95377 273 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 YEATS4O95619 227 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 CACNB1Q02641 598 aaPredicted RBP12.28□□□□□ -0.44
LIG1-211ENST00000596457 MCM6Q14566 821 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 RINT1Q6NUQ1 792 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 SRGAP1Q7Z6B7 1085 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 RNF169Q8NCN4 708 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 MYLIPQ8WY64 445 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 IFT74Q96LB3 600 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 RAD9AQ99638 391 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 RUSC1Q9BVN2 902 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 TSPYL2Q9H2G4 693 aaPredicted RBP12.28□□□□□ -0.44
LIG1-211ENST00000596457 MINDY3Q9H8M7 445 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 RGS18Q9NS28 235 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 CFAP45Q9UL16 551 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 PIN4Q9Y237 131 aaKnown RBP12.28□□□□□ -0.44
LIG1-211ENST00000596457 INSL6Q9Y581 213 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 PCDHB7Q9Y5E2 793 aa12.28□□□□□ -0.44
LIG1-211ENST00000596457 TCHHQ07283 1943 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms