RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 CEP89Q96ST8 783 aa14.04□□□□□ -0.16
UPF1-203ENST00000594504 POP1Q99575 1024 aaKnown RBP14.04□□□□□ -0.16
UPF1-203ENST00000594504 PHF20Q9BVI0 1012 aa14.04□□□□□ -0.16
UPF1-203ENST00000594504 RNF216Q9NWF9 866 aaPredicted RBP14.04□□□□□ -0.16
UPF1-203ENST00000594504 SEPT9Q9UHD8 586 aaPredicted RBP14.04□□□□□ -0.16
UPF1-203ENST00000594504 A0A087WZ62 844 aa14.03□□□□□ -0.16
UPF1-203ENST00000594504 LOC730098B7Z3J9 87 aa14.03□□□□□ -0.16
UPF1-203ENST00000594504 NT5C1B-RDH14C9J2C7 533 aa14.03□□□□□ -0.16
UPF1-203ENST00000594504 CD2BP2O95400 341 aaKnown RBP14.03□□□□□ -0.16
UPF1-203ENST00000594504 SFNP31947 248 aa14.03□□□□□ -0.16
UPF1-203ENST00000594504 JAK3P52333 1124 aa14.03□□□□□ -0.16
UPF1-203ENST00000594504 HMGN5P82970 282 aaKnown RBP14.03□□□□□ -0.16
UPF1-203ENST00000594504 PLCB3Q01970 1234 aa14.03□□□□□ -0.16
UPF1-203ENST00000594504 HERC4Q5GLZ8 1057 aaPredicted RBP14.03□□□□□ -0.16
UPF1-203ENST00000594504 B3GNT9Q6UX72 402 aa14.03□□□□□ -0.16
UPF1-203ENST00000594504 FAM43BQ6ZT52 329 aaPredicted RBP14.03□□□□□ -0.16
UPF1-203ENST00000594504 TMX3Q96JJ7 454 aa14.03□□□□□ -0.16
UPF1-203ENST00000594504 RPGRIP1Q96KN7 1286 aa14.03□□□□□ -0.16
UPF1-203ENST00000594504 TCF25Q9BQ70 676 aa14.03□□□□□ -0.16
UPF1-203ENST00000594504 FDXACB1Q9BRP7 624 aaPredicted RBP14.03□□□□□ -0.16
UPF1-203ENST00000594504 NIFKQ9BYG3 293 aaKnown RBP14.03□□□□□ -0.16
UPF1-203ENST00000594504 KCNJ14Q9UNX9 436 aa14.03□□□□□ -0.16
UPF1-203ENST00000594504 CYP3A7-CYP3A51PA0A087WV96 503 aa14.02□□□□□ -0.17
UPF1-203ENST00000594504 DDX11L8A8MPP1 907 aa14.02□□□□□ -0.17
UPF1-203ENST00000594504 EML1O00423 815 aa14.02□□□□□ -0.17
UPF1-203ENST00000594504 ATF7P17544 494 aaPredicted RBP14.02□□□□□ -0.17
UPF1-203ENST00000594504 CYP3A7P24462 503 aa14.02□□□□□ -0.17
UPF1-203ENST00000594504 TECP42680 631 aa14.02□□□□□ -0.17
UPF1-203ENST00000594504 KCNC3Q14003 757 aa14.02□□□□□ -0.17
UPF1-203ENST00000594504 INF2Q27J81 1249 aa14.02□□□□□ -0.17
UPF1-203ENST00000594504 ZNF598Q86UK7 904 aaKnown RBP14.02□□□□□ -0.17
UPF1-203ENST00000594504 KSR1Q8IVT5 923 aa14.02□□□□□ -0.17
UPF1-203ENST00000594504 ABI1Q8IZP0 508 aa14.02□□□□□ -0.17
UPF1-203ENST00000594504 EDAQ92838 391 aa14.02□□□□□ -0.17
UPF1-203ENST00000594504 LPPQ93052 612 aa14.02□□□□□ -0.17
UPF1-203ENST00000594504 FBXL18Q96ME1 805 aa14.02□□□□□ -0.17
UPF1-203ENST00000594504 ZNF558Q96NG5 402 aa14.02□□□□□ -0.17
UPF1-203ENST00000594504 S1PR5Q9H228 398 aa14.02□□□□□ -0.17
UPF1-203ENST00000594504 ENTPD7Q9NQZ7 604 aa14.02□□□□□ -0.17
UPF1-203ENST00000594504 GJB4Q9NTQ9 266 aa14.02□□□□□ -0.17
UPF1-203ENST00000594504 PUF60Q9UHX1 559 aaKnown RBP14.02□□□□□ -0.17
UPF1-203ENST00000594504 CDH22Q9UJ99 828 aa14.02□□□□□ -0.17
UPF1-203ENST00000594504 IGKV6-21A0A0C4DH24 114 aa14.01□□□□□ -0.17
UPF1-203ENST00000594504 A0A0U1RQF3 1178 aa14.01□□□□□ -0.17
UPF1-203ENST00000594504 HOXA2O43364 376 aa14.01□□□□□ -0.17
UPF1-203ENST00000594504 SLC37A4O43826 429 aa14.01□□□□□ -0.17
UPF1-203ENST00000594504 TRIM29Q14134 588 aa14.01□□□□□ -0.17
UPF1-203ENST00000594504 XKR3Q5GH77 459 aa14.01□□□□□ -0.17
UPF1-203ENST00000594504 PLA2G4FQ68DD2 849 aa14.01□□□□□ -0.17
UPF1-203ENST00000594504 PDE12Q6L8Q7 609 aaKnown RBP14.01□□□□□ -0.17
UPF1-203ENST00000594504 ANKRD54Q6NXT1 300 aa14.01□□□□□ -0.17
UPF1-203ENST00000594504 SYCE2Q6PIF2 218 aa14.01□□□□□ -0.17
UPF1-203ENST00000594504 KRT25Q7Z3Z0 450 aa14.01□□□□□ -0.17
UPF1-203ENST00000594504 TMC7Q7Z402 723 aa14.01□□□□□ -0.17
UPF1-203ENST00000594504 RHPN2Q8IUC4 686 aa14.01□□□□□ -0.17
UPF1-203ENST00000594504 LRRC43Q8N309 656 aa14.01□□□□□ -0.17
UPF1-203ENST00000594504 ZNF579Q8NAF0 562 aaKnown RBP14.01□□□□□ -0.17
UPF1-203ENST00000594504 ETNPPLQ8TBG4 499 aa14.01□□□□□ -0.17
UPF1-203ENST00000594504 MBOAT7Q96N66 472 aa14.01□□□□□ -0.17
UPF1-203ENST00000594504 CDCA3Q99618 268 aaPredicted RBP14.01□□□□□ -0.17
UPF1-203ENST00000594504 PHF7Q9BWX1 381 aaPredicted RBP14.01□□□□□ -0.17
UPF1-203ENST00000594504 GCOM2Q9BZD3 368 aaPredicted RBP14.01□□□□□ -0.17
UPF1-203ENST00000594504 BRMS1Q9HCU9 246 aa14.01□□□□□ -0.17
UPF1-203ENST00000594504 SPG21Q9NZD8 308 aa14.01□□□□□ -0.17
UPF1-203ENST00000594504 DDX25Q9UHL0 483 aaKnown RBP14.01□□□□□ -0.17
UPF1-203ENST00000594504 LZTS1Q9Y250 596 aa14.01□□□□□ -0.17
UPF1-203ENST00000594504 MEIS3P2A8K0S8 358 aa14□□□□□ -0.17
UPF1-203ENST00000594504 EOMESO95936 686 aa14□□□□□ -0.17
UPF1-203ENST00000594504 SP100P23497 879 aaPredicted RBP14□□□□□ -0.17
UPF1-203ENST00000594504 NPEPPSP55786 919 aa14□□□□□ -0.17
UPF1-203ENST00000594504 ZXDAP98168 799 aa14□□□□□ -0.17
UPF1-203ENST00000594504 KRT17Q04695 432 aa14□□□□□ -0.17
UPF1-203ENST00000594504 CBX2Q14781 532 aaPredicted RBP14□□□□□ -0.17
UPF1-203ENST00000594504 NONOQ15233 471 aaKnown RBP eCLIP14□□□□□ -0.17
UPF1-203ENST00000594504 LETM2Q2VYF4 491 aa14□□□□□ -0.17
UPF1-203ENST00000594504 TMEM184AQ6ZMB5 413 aa14□□□□□ -0.17
UPF1-203ENST00000594504 ANO5Q75V66 913 aa14□□□□□ -0.17
UPF1-203ENST00000594504 SLC39A11Q8N1S5 342 aa14□□□□□ -0.17
UPF1-203ENST00000594504 FAM184AQ8NB25 1140 aa14□□□□□ -0.17
UPF1-203ENST00000594504 RDM1Q8NG50 284 aa14□□□□□ -0.17
UPF1-203ENST00000594504 SUSD6Q92537 303 aa14□□□□□ -0.17
UPF1-203ENST00000594504 SUCLA2Q9P2R7 463 aaPredicted RBP14□□□□□ -0.17
UPF1-203ENST00000594504 CCDC194A0A1B0GVG4 234 aa13.99□□□□□ -0.17
UPF1-203ENST00000594504 MAFO75444 373 aaPredicted RBP13.99□□□□□ -0.17
UPF1-203ENST00000594504 CA8P35219 290 aa13.99□□□□□ -0.17
UPF1-203ENST00000594504 KRT2P35908 639 aa13.99□□□□□ -0.17
UPF1-203ENST00000594504 BCAR1P56945 870 aa13.99□□□□□ -0.17
UPF1-203ENST00000594504 KANK3Q6NY19 840 aa13.99□□□□□ -0.17
UPF1-203ENST00000594504 TRIM67Q6ZTA4 783 aa13.99□□□□□ -0.17
UPF1-203ENST00000594504 OXER1Q8TDS5 423 aa13.99□□□□□ -0.17
UPF1-203ENST00000594504 AUTS2Q8WXX7 1259 aa13.99□□□□□ -0.17
UPF1-203ENST00000594504 C8orf76Q96K31 380 aa13.99□□□□□ -0.17
UPF1-203ENST00000594504 NGRNQ9NPE2 291 aaKnown RBP13.99□□□□□ -0.17
UPF1-203ENST00000594504 BMP2KQ9NSY1 1161 aaPredicted RBP13.99□□□□□ -0.17
UPF1-203ENST00000594504 DACT1Q9NYF0 836 aa13.99□□□□□ -0.17
UPF1-203ENST00000594504 WRAP73Q9P2S5 460 aaPredicted RBP13.99□□□□□ -0.17
UPF1-203ENST00000594504 KIF3AQ9Y496 699 aa13.99□□□□□ -0.17
UPF1-203ENST00000594504 TMEM221A6NGB7 291 aa13.98□□□□□ -0.17
UPF1-203ENST00000594504 C2orf71A6NGG8 1288 aa13.98□□□□□ -0.17
UPF1-203ENST00000594504 M0R296 226 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms