RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 TMEM143Q96AN5 459 aa17.04■□□□□ 0.32
TRIM28-203ENST00000593582 TMX3Q96JJ7 454 aa17.04■□□□□ 0.32
TRIM28-203ENST00000593582 MTRQ99707 1265 aa17.04■□□□□ 0.32
TRIM28-203ENST00000593582 NSUN3Q9H649 340 aaKnown RBP17.04■□□□□ 0.32
TRIM28-203ENST00000593582 AAASQ9NRG9 546 aa17.04■□□□□ 0.32
TRIM28-203ENST00000593582 BMP2KQ9NSY1 1161 aaPredicted RBP17.04■□□□□ 0.32
TRIM28-203ENST00000593582 ANKEF1Q9NU02 776 aa17.04■□□□□ 0.32
TRIM28-203ENST00000593582 PLAGL2Q9UPG8 496 aa17.04■□□□□ 0.32
TRIM28-203ENST00000593582 A0A0U1RQF3 1178 aa17.03■□□□□ 0.32
TRIM28-203ENST00000593582 OR52Z1P0C646 297 aa17.03■□□□□ 0.32
TRIM28-203ENST00000593582 SRGAP2CP0DJJ0 459 aa17.03■□□□□ 0.32
TRIM28-203ENST00000593582 U2AF2P26368 475 aaKnown RBP eCLIP17.03■□□□□ 0.32
TRIM28-203ENST00000593582 TECP42680 631 aa17.03■□□□□ 0.32
TRIM28-203ENST00000593582 LAMTOR4Q0VGL1 99 aa17.03■□□□□ 0.32
TRIM28-203ENST00000593582 CATSPER4Q7RTX7 472 aa17.03■□□□□ 0.32
TRIM28-203ENST00000593582 ECHDC2Q86YB7 292 aa17.03■□□□□ 0.32
TRIM28-203ENST00000593582 ABI1Q8IZP0 508 aa17.03■□□□□ 0.32
TRIM28-203ENST00000593582 RNF169Q8NCN4 708 aa17.03■□□□□ 0.32
TRIM28-203ENST00000593582 ERMNQ8TAM6 284 aa17.03■□□□□ 0.32
TRIM28-203ENST00000593582 TMEM117Q9H0C3 514 aa17.03■□□□□ 0.32
TRIM28-203ENST00000593582 IFT122Q9HBG6 1241 aa17.03■□□□□ 0.32
TRIM28-203ENST00000593582 ALG13Q9NP73 1137 aaKnown RBP17.03■□□□□ 0.32
TRIM28-203ENST00000593582 PIN4Q9Y237 131 aaKnown RBP17.03■□□□□ 0.32
TRIM28-203ENST00000593582 PCDHB12Q9Y5F1 795 aa17.03■□□□□ 0.32
TRIM28-203ENST00000593582 NLRC5Q86WI3 1866 aa17.03■□□□□ 0.32
TRIM28-203ENST00000593582 ASAP2O43150 1006 aa17.02■□□□□ 0.32
TRIM28-203ENST00000593582 DGAT1O75907 488 aa17.02■□□□□ 0.32
TRIM28-203ENST00000593582 CD2BP2O95400 341 aaKnown RBP17.02■□□□□ 0.32
TRIM28-203ENST00000593582 EOMESO95936 686 aa17.02■□□□□ 0.32
TRIM28-203ENST00000593582 KCNQ1P51787 676 aa17.02■□□□□ 0.32
TRIM28-203ENST00000593582 MXD4Q14582 209 aaPredicted RBP17.02■□□□□ 0.32
TRIM28-203ENST00000593582 TCEAL5Q5H9L2 206 aa17.02■□□□□ 0.32
TRIM28-203ENST00000593582 TWF2Q6IBS0 349 aaKnown RBP17.02■□□□□ 0.32
TRIM28-203ENST00000593582 SRGAP1Q7Z6B7 1085 aa17.02■□□□□ 0.32
TRIM28-203ENST00000593582 FERMT3Q86UX7 667 aa17.02■□□□□ 0.32
TRIM28-203ENST00000593582 KLHL23Q8NBE8 558 aa17.02■□□□□ 0.32
TRIM28-203ENST00000593582 ADAMTS19Q8TE59 1207 aa17.02■□□□□ 0.32
TRIM28-203ENST00000593582 UBE2ZQ9H832 354 aaPredicted RBP17.02■□□□□ 0.32
TRIM28-203ENST00000593582 ITGB1P05556 798 aa17.01■□□□□ 0.31
TRIM28-203ENST00000593582 SKIP12755 728 aa17.01■□□□□ 0.31
TRIM28-203ENST00000593582 XRCC6P12956 609 aaKnown RBP eCLIP17.01■□□□□ 0.313e-9■□□□□ 11
TRIM28-203ENST00000593582 BMP1P13497 986 aa17.01■□□□□ 0.31
TRIM28-203ENST00000593582 RARRES1P49788 294 aa17.01■□□□□ 0.31
TRIM28-203ENST00000593582 CSPP1Q1MSJ5 1256 aa17.01■□□□□ 0.31
TRIM28-203ENST00000593582 CATSPER3Q86XQ3 398 aa17.01■□□□□ 0.31
TRIM28-203ENST00000593582 RNF149Q8NC42 400 aa17.01■□□□□ 0.31
TRIM28-203ENST00000593582 PIGOQ8TEQ8 1089 aa17.01■□□□□ 0.31
TRIM28-203ENST00000593582 CASD1Q96PB1 797 aa17.01■□□□□ 0.31
TRIM28-203ENST00000593582 UHRF1Q96T88 793 aaPredicted RBP17.01■□□□□ 0.31
TRIM28-203ENST00000593582 TRAIPQ9BWF2 469 aa17.01■□□□□ 0.31
TRIM28-203ENST00000593582 TUFT1Q9NNX1 390 aa17.01■□□□□ 0.31
TRIM28-203ENST00000593582 TYW1Q9NV66 732 aaKnown RBP17.01■□□□□ 0.31
TRIM28-203ENST00000593582 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17■□□□□ 0.31
TRIM28-203ENST00000593582 NCK2O43639 380 aa17■□□□□ 0.31
TRIM28-203ENST00000593582 CSPG5O95196 566 aa17■□□□□ 0.31
TRIM28-203ENST00000593582 SPATA31C1P0DKV0 1188 aa17■□□□□ 0.31
TRIM28-203ENST00000593582 KCNA5P22460 613 aa17■□□□□ 0.31
TRIM28-203ENST00000593582 GJB2P29033 226 aa17■□□□□ 0.31
TRIM28-203ENST00000593582 PHKA2P46019 1235 aa17■□□□□ 0.31
TRIM28-203ENST00000593582 MCTP1Q6DN14 999 aa17■□□□□ 0.31
TRIM28-203ENST00000593582 LRRC43Q8N309 656 aa17■□□□□ 0.31
TRIM28-203ENST00000593582 SPPL3Q8TCT6 385 aa17■□□□□ 0.31
TRIM28-203ENST00000593582 NACC1Q96RE7 527 aa17■□□□□ 0.31
TRIM28-203ENST00000593582 POLR3CQ9BUI4 534 aaPredicted RBP17■□□□□ 0.31
TRIM28-203ENST00000593582 XPNPEP1Q9NQW7 623 aa17■□□□□ 0.31
TRIM28-203ENST00000593582 RNF19AQ9NV58 838 aa17■□□□□ 0.31
TRIM28-203ENST00000593582 TTC28Q96AY4 2481 aa16.99■□□□□ 0.31
TRIM28-203ENST00000593582 H3BQV1 296 aa16.99■□□□□ 0.31
TRIM28-203ENST00000593582 LAG3P18627 525 aa16.99■□□□□ 0.31
TRIM28-203ENST00000593582 RPA1P27694 616 aa16.99■□□□□ 0.31
TRIM28-203ENST00000593582 RAB27AP51159 221 aa16.99■□□□□ 0.31
TRIM28-203ENST00000593582 CAMK1Q14012 370 aa16.99■□□□□ 0.31
TRIM28-203ENST00000593582 TFDP1Q14186 410 aa16.99■□□□□ 0.31
TRIM28-203ENST00000593582 NBR1Q14596 966 aa16.99■□□□□ 0.31
TRIM28-203ENST00000593582 PCBP1Q15365 356 aaKnown RBP eCLIP16.99■□□□□ 0.318e-11■■■□□ 15.8
TRIM28-203ENST00000593582 CLLU1OSQ5K130 101 aa16.99■□□□□ 0.31
TRIM28-203ENST00000593582 HAUS3Q68CZ6 603 aa16.99■□□□□ 0.31
TRIM28-203ENST00000593582 ZNF598Q86UK7 904 aaKnown RBP16.99■□□□□ 0.31
TRIM28-203ENST00000593582 THNSL1Q8IYQ7 743 aa16.99■□□□□ 0.31
TRIM28-203ENST00000593582 POF1BQ8WVV4 589 aa16.99■□□□□ 0.31
TRIM28-203ENST00000593582 RSPH1Q8WYR4 309 aa16.99■□□□□ 0.31
TRIM28-203ENST00000593582 PPP2R3CQ969Q6 453 aa16.99■□□□□ 0.31
TRIM28-203ENST00000593582 AGPAT5Q9NUQ2 364 aa16.99■□□□□ 0.31
TRIM28-203ENST00000593582 HCSTQ9UBK5 93 aa16.99■□□□□ 0.31
TRIM28-203ENST00000593582 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.99■□□□□ 0.31
TRIM28-203ENST00000593582 A0A087WWV3 80 aa16.98■□□□□ 0.31
TRIM28-203ENST00000593582 MED24O75448 989 aa16.98■□□□□ 0.31
TRIM28-203ENST00000593582 FGF18O76093 207 aa16.98■□□□□ 0.31
TRIM28-203ENST00000593582 ATF7P17544 494 aaPredicted RBP16.98■□□□□ 0.31
TRIM28-203ENST00000593582 DNAJB1P25685 340 aa16.98■□□□□ 0.31
TRIM28-203ENST00000593582 TOB1P50616 345 aaPredicted RBP16.98■□□□□ 0.31
TRIM28-203ENST00000593582 FXR2P51116 673 aaKnown RBP eCLIP16.98■□□□□ 0.311e-13■■■■□ 21.6
TRIM28-203ENST00000593582 UBE3AQ05086 875 aa16.98■□□□□ 0.31
TRIM28-203ENST00000593582 POU5F1BQ06416 359 aa16.98■□□□□ 0.31
TRIM28-203ENST00000593582 NCBP1Q09161 790 aaKnown RBP16.98■□□□□ 0.31
TRIM28-203ENST00000593582 PTGDRQ13258 359 aa16.98■□□□□ 0.31
TRIM28-203ENST00000593582 POTEGQ6S5H5 508 aa16.98■□□□□ 0.31
TRIM28-203ENST00000593582 LRRC55Q6ZSA7 311 aa16.98■□□□□ 0.31
TRIM28-203ENST00000593582 EP400NLQ6ZTU2 488 aa16.98■□□□□ 0.31
TRIM28-203ENST00000593582 C4orf32Q8N8J7 132 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms