RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 RALGAPA2Q2PPJ7 1873 aa13.21□□□□□ -0.29
LIG3-213ENST00000590630 MGEA5O60502 916 aa13.21□□□□□ -0.29
LIG3-213ENST00000590630 UPP2O95045 317 aa13.21□□□□□ -0.29
LIG3-213ENST00000590630 SRGAP2CP0DJJ0 459 aa13.21□□□□□ -0.29
LIG3-213ENST00000590630 ZSCAN20P17040 1043 aaPredicted RBP13.21□□□□□ -0.29
LIG3-213ENST00000590630 PHKA2P46019 1235 aa13.21□□□□□ -0.29
LIG3-213ENST00000590630 CEBPZQ03701 1054 aaKnown RBP13.21□□□□□ -0.29
LIG3-213ENST00000590630 PKP1Q13835 747 aa13.21□□□□□ -0.29
LIG3-213ENST00000590630 PCBP1Q15365 356 aaKnown RBP eCLIP13.21□□□□□ -0.29
LIG3-213ENST00000590630 ZRSR1Q15695 479 aaKnown RBP13.21□□□□□ -0.29
LIG3-213ENST00000590630 ATL3Q6DD88 541 aa13.21□□□□□ -0.29
LIG3-213ENST00000590630 FAM117BQ6P1L5 589 aa13.21□□□□□ -0.29
LIG3-213ENST00000590630 SLC24A5Q71RS6 500 aa13.21□□□□□ -0.29
LIG3-213ENST00000590630 CABP7Q86V35 215 aa13.21□□□□□ -0.29
LIG3-213ENST00000590630 NPAS4Q8IUM7 802 aa13.21□□□□□ -0.29
LIG3-213ENST00000590630 CALML4Q96GE6 196 aa13.21□□□□□ -0.29
LIG3-213ENST00000590630 YME1L1Q96TA2 773 aa13.21□□□□□ -0.29
LIG3-213ENST00000590630 ADAM2Q99965 735 aa13.21□□□□□ -0.29
LIG3-213ENST00000590630 NFKBIZQ9BYH8 718 aa13.21□□□□□ -0.29
LIG3-213ENST00000590630 POLR3FQ9H1D9 316 aaPredicted RBP13.21□□□□□ -0.29
LIG3-213ENST00000590630 MTMR10Q9NXD2 777 aa13.21□□□□□ -0.29
LIG3-213ENST00000590630 FBXO2Q9UK22 296 aaPredicted RBP13.21□□□□□ -0.29
LIG3-213ENST00000590630 FNDC1Q4ZHG4 1894 aaPredicted RBP13.21□□□□□ -0.3
LIG3-213ENST00000590630 TCHHQ07283 1943 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 E9PMD0 336 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 CSDE1O75534 798 aaKnown RBP13.2□□□□□ -0.3
LIG3-213ENST00000590630 STAG3L1P0CL83 205 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 GLRA2P23416 452 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 MARCKSP29966 332 aaPredicted RBP13.2□□□□□ -0.3
LIG3-213ENST00000590630 SARSP49591 514 aaKnown RBP13.2□□□□□ -0.3
LIG3-213ENST00000590630 PTENP60484 403 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 GRIN1Q05586 938 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 GRB10Q13322 594 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 CAPSQ13938 189 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 DSC3Q14574 896 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 TMEM119Q4V9L6 283 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 FAM102BQ5T8I3 360 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 FOXD4L5Q5VV16 416 aaPredicted RBP13.2□□□□□ -0.3
LIG3-213ENST00000590630 IFNLR1Q8IU57 520 aaPredicted RBP13.2□□□□□ -0.3
LIG3-213ENST00000590630 CRIPAKQ8N1N5 446 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 KRI1Q8N9T8 703 aaKnown RBP13.2□□□□□ -0.3
LIG3-213ENST00000590630 SP7Q8TDD2 431 aaPredicted RBP13.2□□□□□ -0.3
LIG3-213ENST00000590630 ASAP3Q8TDY4 903 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 FOXD4L4Q8WXT5 416 aaPredicted RBP13.2□□□□□ -0.3
LIG3-213ENST00000590630 KIFAP3Q92845 792 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 FAM161BQ96MY7 647 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 PNMA5Q96PV4 448 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 CCSER1Q9C0I3 900 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 CHST12Q9NRB3 414 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 DACT1Q9NYF0 836 aa13.2□□□□□ -0.3
LIG3-213ENST00000590630 REV3LO60673 3130 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 LCHNA4D1U4 455 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 C9IYK1 514 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 YEATS4O95619 227 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 FGFR4P22455 802 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 TXLNAP40222 546 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 TAP1Q03518 808 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 PPP2R5AQ15172 486 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 STK38Q15208 465 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 MAEAQ7L5Y9 396 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 CATSPER4Q7RTX7 472 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 KCNK18Q7Z418 384 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 LINC00301Q8NCQ3 95 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 RASSF8Q8NHQ8 419 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 TIPINQ9BVW5 301 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 TRAIPQ9BWF2 469 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 CSRNP2Q9H175 543 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 ELAC1Q9H777 363 aaKnown RBP13.19□□□□□ -0.3
LIG3-213ENST00000590630 GPRC5CQ9NQ84 441 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 KCND2Q9NZV8 630 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 LRFN2Q9ULH4 789 aa13.19□□□□□ -0.3
LIG3-213ENST00000590630 LINC01553A4QN01 128 aa13.18□□□□□ -0.3
LIG3-213ENST00000590630 SPTLC2O15270 562 aa13.18□□□□□ -0.3
LIG3-213ENST00000590630 PPP6R2O75170 966 aa13.18□□□□□ -0.3
LIG3-213ENST00000590630 DGKIO75912 1065 aa13.18□□□□□ -0.3
LIG3-213ENST00000590630 ERLIN2O94905 339 aa13.18□□□□□ -0.3
LIG3-213ENST00000590630 BRD1O95696 1058 aa13.18□□□□□ -0.3
LIG3-213ENST00000590630 FAM189BP81408 668 aa13.18□□□□□ -0.3
LIG3-213ENST00000590630 GRIN2CQ14957 1233 aa13.18□□□□□ -0.3
LIG3-213ENST00000590630 RINT1Q6NUQ1 792 aa13.18□□□□□ -0.3
LIG3-213ENST00000590630 SYT2Q8N9I0 419 aaPredicted RBP13.18□□□□□ -0.3
LIG3-213ENST00000590630 DRC1Q96MC2 740 aa13.18□□□□□ -0.3
LIG3-213ENST00000590630 GUCD1Q96NT3 240 aa13.18□□□□□ -0.3
LIG3-213ENST00000590630 PLIN2Q99541 437 aa13.18□□□□□ -0.3
LIG3-213ENST00000590630 MINDY3Q9H8M7 445 aa13.18□□□□□ -0.3
LIG3-213ENST00000590630 RC3H2Q9HBD1 1191 aaKnown RBP13.18□□□□□ -0.3
LIG3-213ENST00000590630 AGPAT5Q9NUQ2 364 aa13.18□□□□□ -0.3
LIG3-213ENST00000590630 TMEM161AQ9NX61 479 aa13.18□□□□□ -0.3
LIG3-213ENST00000590630 TFIP11Q9UBB9 837 aaKnown RBP13.18□□□□□ -0.3
LIG3-213ENST00000590630 CFAP45Q9UL16 551 aa13.18□□□□□ -0.3
LIG3-213ENST00000590630 PIN4Q9Y237 131 aaKnown RBP13.18□□□□□ -0.3
LIG3-213ENST00000590630 PCDHB7Q9Y5E2 793 aa13.18□□□□□ -0.3
LIG3-213ENST00000590630 KIAA1671Q9BY89 1806 aa13.18□□□□□ -0.3
LIG3-213ENST00000590630 ADGRA3Q8IWK6 1321 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 A0A0U1RQF3 1178 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 LRRIQ4A6NIV6 560 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 INO80B-WBP1J3KQ70 363 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 ARHGEF15O94989 841 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 SLC34A2O95436 690 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 SSBP05455 408 aaKnown RBP eCLIP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms