RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 CSTF1Q05048 431 aaKnown RBP12.51□□□□□ -0.41
ZNF540-209ENST00000590588 TRDNQ13061 729 aa12.51□□□□□ -0.41
ZNF540-209ENST00000590588 PPM1JQ5JR12 505 aa12.51□□□□□ -0.41
ZNF540-209ENST00000590588 ELMSAN1Q6PJG2 1045 aa12.51□□□□□ -0.41
ZNF540-209ENST00000590588 ZNF598Q86UK7 904 aaKnown RBP12.51□□□□□ -0.41
ZNF540-209ENST00000590588 TMEM173Q86WV6 379 aaPredicted RBP12.51□□□□□ -0.41
ZNF540-209ENST00000590588 ZBTB44Q8NCP5 570 aa12.51□□□□□ -0.41
ZNF540-209ENST00000590588 FOXQ1Q9C009 403 aa12.51□□□□□ -0.41
ZNF540-209ENST00000590588 ZSCAN32Q9NX65 697 aa12.51□□□□□ -0.41
ZNF540-209ENST00000590588 DACT1Q9NYF0 836 aa12.51□□□□□ -0.41
ZNF540-209ENST00000590588 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.51□□□□□ -0.41
ZNF540-209ENST00000590588 SEC63Q9UGP8 760 aaKnown RBP12.51□□□□□ -0.41
ZNF540-209ENST00000590588 PCDHA6Q9UN73 950 aa12.51□□□□□ -0.41
ZNF540-209ENST00000590588 SMG5Q9UPR3 1016 aaKnown RBP12.51□□□□□ -0.41
ZNF540-209ENST00000590588 PCDHA8Q9Y5H6 950 aa12.51□□□□□ -0.41
ZNF540-209ENST00000590588 GPR179Q6PRD1 2367 aa12.51□□□□□ -0.41
ZNF540-209ENST00000590588 CHD8Q9HCK8 2581 aa12.51□□□□□ -0.41
ZNF540-209ENST00000590588 IFIT3O14879 490 aaKnown RBP12.5□□□□□ -0.41
ZNF540-209ENST00000590588 GALTP07902 379 aa12.5□□□□□ -0.41
ZNF540-209ENST00000590588 CNPP09543 421 aaKnown RBP12.5□□□□□ -0.41
ZNF540-209ENST00000590588 SMARCA1P28370 1054 aa12.5□□□□□ -0.41
ZNF540-209ENST00000590588 NLRP11P59045 1033 aaKnown RBP12.5□□□□□ -0.41
ZNF540-209ENST00000590588 COL9A3Q14050 684 aaPredicted RBP12.5□□□□□ -0.41
ZNF540-209ENST00000590588 PDXDC2PQ6P474 469 aa12.5□□□□□ -0.41
ZNF540-209ENST00000590588 CWC27Q6UX04 472 aaKnown RBP12.5□□□□□ -0.41
ZNF540-209ENST00000590588 ABHD15Q6UXT9 468 aa12.5□□□□□ -0.41
ZNF540-209ENST00000590588 MYADMQ96S97 322 aa12.5□□□□□ -0.41
ZNF540-209ENST00000590588 SPZ1Q9BXG8 430 aa12.5□□□□□ -0.41
ZNF540-209ENST00000590588 EPC1Q9H2F5 836 aa12.5□□□□□ -0.41
ZNF540-209ENST00000590588 ZNF302Q9NR11 478 aa12.5□□□□□ -0.41
ZNF540-209ENST00000590588 GMEB2Q9UKD1 530 aa12.5□□□□□ -0.41
ZNF540-209ENST00000590588 RALYQ9UKM9 306 aaKnown RBP12.5□□□□□ -0.41
ZNF540-209ENST00000590588 PCDHB15Q9Y5E8 787 aa12.5□□□□□ -0.41
ZNF540-209ENST00000590588 CLUHO75153 1309 aa12.5□□□□□ -0.41
ZNF540-209ENST00000590588 KANSL1LA0AUZ9 987 aa12.49□□□□□ -0.41
ZNF540-209ENST00000590588 ZBTB42B2RXF5 422 aa12.49□□□□□ -0.41
ZNF540-209ENST00000590588 LILRB3O75022 631 aa12.49□□□□□ -0.41
ZNF540-209ENST00000590588 LILRB5O75023 590 aa12.49□□□□□ -0.41
ZNF540-209ENST00000590588 LRRN2O75325 713 aa12.49□□□□□ -0.41
ZNF540-209ENST00000590588 C22orf31O95567 290 aa12.49□□□□□ -0.41
ZNF540-209ENST00000590588 LAMP2P13473 410 aa12.49□□□□□ -0.41
ZNF540-209ENST00000590588 MAGEA9P43362 315 aa12.49□□□□□ -0.41
ZNF540-209ENST00000590588 DMWDQ09019 674 aa12.49□□□□□ -0.41
ZNF540-209ENST00000590588 WTAPQ15007 396 aa12.49□□□□□ -0.41
ZNF540-209ENST00000590588 CATIPQ7Z7H3 387 aa12.49□□□□□ -0.41
ZNF540-209ENST00000590588 NETO1Q8TDF5 533 aa12.49□□□□□ -0.41
ZNF540-209ENST00000590588 BBXQ8WY36 941 aaPredicted RBP12.49□□□□□ -0.41
ZNF540-209ENST00000590588 OSBPL6Q9BZF3 934 aa12.49□□□□□ -0.41
ZNF540-209ENST00000590588 ADAMTS10Q9H324 1103 aa12.49□□□□□ -0.41
ZNF540-209ENST00000590588 NRDE2Q9H7Z3 1164 aa12.49□□□□□ -0.41
ZNF540-209ENST00000590588 MAN1C1Q9NR34 630 aa12.49□□□□□ -0.41
ZNF540-209ENST00000590588 SH2B1Q9NRF2 756 aaPredicted RBP12.49□□□□□ -0.41
ZNF540-209ENST00000590588 MRPL17Q9NRX2 175 aaKnown RBP12.49□□□□□ -0.41
ZNF540-209ENST00000590588 AKT3Q9Y243 479 aa12.49□□□□□ -0.41
ZNF540-209ENST00000590588 ANHXE9PGG2 379 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 SLC30A4O14863 429 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 INPPL1O15357 1258 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 MAGEB2O15479 319 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 TMOD1P28289 359 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 KIF5BP33176 963 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 RNASELQ05823 741 aaKnown RBP12.48□□□□□ -0.41
ZNF540-209ENST00000590588 AAMPQ13685 434 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 SART3Q15020 963 aaKnown RBP12.48□□□□□ -0.41
ZNF540-209ENST00000590588 ACAP1Q15027 740 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 UBE2SQ16763 222 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 SWSAP1Q6NVH7 229 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 MIS18BP1Q6P0N0 1132 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 CKAP2LQ8IYA6 745 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 MAP7D2Q96T17 732 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 MAP3K14Q99558 947 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 LZTS2Q9BRK4 669 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 SENP2Q9HC62 589 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 AGO4Q9HCK5 861 aaKnown RBP12.48□□□□□ -0.41
ZNF540-209ENST00000590588 CHST12Q9NRB3 414 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 CEP131Q9UPN4 1083 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 SSX2IPQ9Y2D8 614 aa12.48□□□□□ -0.41
ZNF540-209ENST00000590588 EVPLQ92817 2033 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 ATRXP46100 2492 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 FAM170BA6NMN3 283 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 ALDH2P05091 517 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 SSBP05455 408 aaKnown RBP eCLIP12.47□□□□□ -0.41
ZNF540-209ENST00000590588 SKIP12755 728 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 ATP4AP20648 1035 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 GPC5P78333 572 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 PRKCQQ04759 706 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 ITGB3BPQ13352 177 aaPredicted RBP12.47□□□□□ -0.41
ZNF540-209ENST00000590588 SNW1Q13573 536 aaKnown RBP12.47□□□□□ -0.41
ZNF540-209ENST00000590588 CEP55Q53EZ4 464 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 NOMO2Q5JPE7 1267 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 EFCAB12Q6NXP0 572 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 GLB1LQ6UWU2 654 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 CCDC60Q8IWA6 550 aaPredicted RBP12.47□□□□□ -0.41
ZNF540-209ENST00000590588 CTCFLQ8NI51 663 aaPredicted RBP12.47□□□□□ -0.41
ZNF540-209ENST00000590588 BCL7CQ8WUZ0 217 aaPredicted RBP12.47□□□□□ -0.41
ZNF540-209ENST00000590588 SMG7Q92540 1137 aaKnown RBP12.47□□□□□ -0.41
ZNF540-209ENST00000590588 NELL1Q92832 810 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 DDX23Q9BUQ8 820 aaKnown RBP12.47□□□□□ -0.41
ZNF540-209ENST00000590588 VN1R3Q9BXE9 311 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 PIDD1Q9HB75 910 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 PARD6AQ9NPB6 346 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms