RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 GJB2P29033 226 aa16.93■□□□□ 0.3
CLIP3-202ENST00000585466 POLGP54098 1239 aaPredicted RBP16.93■□□□□ 0.3
CLIP3-202ENST00000585466 LAMTOR4Q0VGL1 99 aa16.93■□□□□ 0.3
CLIP3-202ENST00000585466 TJAP1Q5JTD0 557 aa16.93■□□□□ 0.3
CLIP3-202ENST00000585466 CLLU1OSQ5K130 101 aa16.93■□□□□ 0.3
CLIP3-202ENST00000585466 LRRC55Q6ZSA7 311 aa16.93■□□□□ 0.3
CLIP3-202ENST00000585466 OTUD6AQ7L8S5 288 aa16.93■□□□□ 0.3
CLIP3-202ENST00000585466 FERMT3Q86UX7 667 aa16.93■□□□□ 0.3
CLIP3-202ENST00000585466 PIGOQ8TEQ8 1089 aa16.93■□□□□ 0.3
CLIP3-202ENST00000585466 P2RX5Q93086 422 aa16.93■□□□□ 0.3
CLIP3-202ENST00000585466 NLRP4Q96MN2 994 aa16.93■□□□□ 0.3
CLIP3-202ENST00000585466 CASD1Q96PB1 797 aa16.93■□□□□ 0.3
CLIP3-202ENST00000585466 POLR3CQ9BUI4 534 aaPredicted RBP16.93■□□□□ 0.3
CLIP3-202ENST00000585466 TRAIPQ9BWF2 469 aa16.93■□□□□ 0.3
CLIP3-202ENST00000585466 PLVAPQ9BX97 442 aa16.93■□□□□ 0.3
CLIP3-202ENST00000585466 CWH43Q9H720 699 aa16.93■□□□□ 0.3
CLIP3-202ENST00000585466 LRFN2Q9ULH4 789 aa16.93■□□□□ 0.3
CLIP3-202ENST00000585466 A0A0U1RQF3 1178 aa16.92■□□□□ 0.3
CLIP3-202ENST00000585466 TBKBP1A7MCY6 615 aa16.92■□□□□ 0.3
CLIP3-202ENST00000585466 GAS2O43903 313 aaKnown RBP16.92■□□□□ 0.3
CLIP3-202ENST00000585466 ITGB1P05556 798 aa16.92■□□□□ 0.3
CLIP3-202ENST00000585466 IBSPP21815 317 aaPredicted RBP16.92■□□□□ 0.3
CLIP3-202ENST00000585466 TECP42680 631 aa16.92■□□□□ 0.3
CLIP3-202ENST00000585466 MCM2P49736 904 aa16.92■□□□□ 0.3
CLIP3-202ENST00000585466 FXR2P51116 673 aaKnown RBP eCLIP16.92■□□□□ 0.3
CLIP3-202ENST00000585466 MRPS5P82675 430 aaKnown RBP16.92■□□□□ 0.3
CLIP3-202ENST00000585466 IL17AQ16552 155 aa16.92■□□□□ 0.3
CLIP3-202ENST00000585466 ECM1Q16610 540 aa16.92■□□□□ 0.3
CLIP3-202ENST00000585466 ASAP3Q8TDY4 903 aa16.92■□□□□ 0.3
CLIP3-202ENST00000585466 PSPC1Q8WXF1 523 aaKnown RBP16.92■□□□□ 0.3
CLIP3-202ENST00000585466 SCLT1Q96NL6 688 aa16.92■□□□□ 0.3
CLIP3-202ENST00000585466 C11orf84Q9BUA3 381 aaPredicted RBP16.92■□□□□ 0.3
CLIP3-202ENST00000585466 TUFT1Q9NNX1 390 aa16.92■□□□□ 0.3
CLIP3-202ENST00000585466 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.92■□□□□ 0.3
CLIP3-202ENST00000585466 CHST12Q9NRB3 414 aa16.92■□□□□ 0.3
CLIP3-202ENST00000585466 PLAGL2Q9UPG8 496 aa16.92■□□□□ 0.3
CLIP3-202ENST00000585466 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.91■□□□□ 0.3
CLIP3-202ENST00000585466 XRCC6P12956 609 aaKnown RBP eCLIP16.91■□□□□ 0.3
CLIP3-202ENST00000585466 BMP1P13497 986 aa16.91■□□□□ 0.3
CLIP3-202ENST00000585466 SFPQP23246 707 aaKnown RBP eCLIP16.91■□□□□ 0.3
CLIP3-202ENST00000585466 HOXA11P31270 313 aaPredicted RBP16.91■□□□□ 0.3
CLIP3-202ENST00000585466 ARL2P36404 184 aa16.91■□□□□ 0.3
CLIP3-202ENST00000585466 KCNQ1P51787 676 aa16.91■□□□□ 0.3
CLIP3-202ENST00000585466 CUL4AQ13619 759 aa16.91■□□□□ 0.3
CLIP3-202ENST00000585466 IFNLR1Q8IU57 520 aaPredicted RBP16.91■□□□□ 0.3
CLIP3-202ENST00000585466 EXOC8Q8IYI6 725 aa16.91■□□□□ 0.3
CLIP3-202ENST00000585466 IGSF22Q8N9C0 903 aa16.91■□□□□ 0.3
CLIP3-202ENST00000585466 KLHL23Q8NBE8 558 aa16.91■□□□□ 0.3
CLIP3-202ENST00000585466 SPPL3Q8TCT6 385 aa16.91■□□□□ 0.3
CLIP3-202ENST00000585466 MTRQ99707 1265 aa16.91■□□□□ 0.3
CLIP3-202ENST00000585466 TMEM117Q9H0C3 514 aa16.91■□□□□ 0.3
CLIP3-202ENST00000585466 ATP6V0A4Q9HBG4 840 aa16.91■□□□□ 0.3
CLIP3-202ENST00000585466 ALG13Q9NP73 1137 aaKnown RBP16.91■□□□□ 0.3
CLIP3-202ENST00000585466 COG5Q9UP83 839 aa16.91■□□□□ 0.3
CLIP3-202ENST00000585466 DGAT1O75907 488 aa16.9■□□□□ 0.3
CLIP3-202ENST00000585466 ZSCAN20P17040 1043 aaPredicted RBP16.9■□□□□ 0.3
CLIP3-202ENST00000585466 RPA1P27694 616 aa16.9■□□□□ 0.3
CLIP3-202ENST00000585466 PHKA2P46019 1235 aa16.9■□□□□ 0.3
CLIP3-202ENST00000585466 PTGDRQ13258 359 aa16.9■□□□□ 0.3
CLIP3-202ENST00000585466 SKIV2LQ15477 1246 aaKnown RBP16.9■□□□□ 0.3
CLIP3-202ENST00000585466 PTPROQ16827 1216 aa16.9■□□□□ 0.3
CLIP3-202ENST00000585466 TIGD5Q53EQ6 642 aa16.9■□□□□ 0.3
CLIP3-202ENST00000585466 TCEAL5Q5H9L2 206 aa16.9■□□□□ 0.3
CLIP3-202ENST00000585466 POTEGQ6S5H5 508 aa16.9■□□□□ 0.3
CLIP3-202ENST00000585466 SRGAP1Q7Z6B7 1085 aa16.9■□□□□ 0.3
CLIP3-202ENST00000585466 TCP11Q8WWU5 503 aa16.9■□□□□ 0.3
CLIP3-202ENST00000585466 LMAN2LQ9H0V9 348 aa16.9■□□□□ 0.3
CLIP3-202ENST00000585466 AGPAT5Q9NUQ2 364 aa16.9■□□□□ 0.3
CLIP3-202ENST00000585466 TYW1Q9NV66 732 aaKnown RBP16.9■□□□□ 0.3
CLIP3-202ENST00000585466 DBR1Q9UK59 544 aaKnown RBP16.9■□□□□ 0.3
CLIP3-202ENST00000585466 NOL7Q9UMY1 257 aaKnown RBP16.9■□□□□ 0.3
CLIP3-202ENST00000585466 BDP1A6H8Y1 2624 aa16.89■□□□□ 0.29
CLIP3-202ENST00000585466 MEIS3P2A8K0S8 358 aa16.89■□□□□ 0.29
CLIP3-202ENST00000585466 SRGAP2CP0DJJ0 459 aa16.89■□□□□ 0.29
CLIP3-202ENST00000585466 GLRA2P23416 452 aa16.89■□□□□ 0.29
CLIP3-202ENST00000585466 PTENP60484 403 aa16.89■□□□□ 0.29
CLIP3-202ENST00000585466 GNL2Q13823 731 aaKnown RBP16.89■□□□□ 0.29
CLIP3-202ENST00000585466 CAPSQ13938 189 aa16.89■□□□□ 0.29
CLIP3-202ENST00000585466 AMHR2Q16671 573 aa16.89■□□□□ 0.29
CLIP3-202ENST00000585466 NAALADL2Q58DX5 795 aa16.89■□□□□ 0.29
CLIP3-202ENST00000585466 UBXN11Q5T124 520 aa16.89■□□□□ 0.29
CLIP3-202ENST00000585466 COLGALT1Q8NBJ5 622 aa16.89■□□□□ 0.29
CLIP3-202ENST00000585466 RNF149Q8NC42 400 aa16.89■□□□□ 0.29
CLIP3-202ENST00000585466 HLA-CQ95604 372 aa16.89■□□□□ 0.29
CLIP3-202ENST00000585466 INO80BQ9C086 356 aaPredicted RBP16.89■□□□□ 0.29
CLIP3-202ENST00000585466 NSUN3Q9H649 340 aaKnown RBP16.89■□□□□ 0.29
CLIP3-202ENST00000585466 UBE2ZQ9H832 354 aaPredicted RBP16.89■□□□□ 0.29
CLIP3-202ENST00000585466 RNF216Q9NWF9 866 aaPredicted RBP16.89■□□□□ 0.29
CLIP3-202ENST00000585466 DACT1Q9NYF0 836 aa16.89■□□□□ 0.29
CLIP3-202ENST00000585466 PIN4Q9Y237 131 aaKnown RBP16.89■□□□□ 0.29
CLIP3-202ENST00000585466 ASAP2O43150 1006 aa16.88■□□□□ 0.29
CLIP3-202ENST00000585466 ZNF623O75123 536 aa16.88■□□□□ 0.29
CLIP3-202ENST00000585466 EOMESO95936 686 aa16.88■□□□□ 0.29
CLIP3-202ENST00000585466 IRS1P35568 1242 aa16.88■□□□□ 0.29
CLIP3-202ENST00000585466 POU5F1BQ06416 359 aa16.88■□□□□ 0.29
CLIP3-202ENST00000585466 CATSPER4Q7RTX7 472 aa16.88■□□□□ 0.29
CLIP3-202ENST00000585466 GPRC5CQ9NQ84 441 aa16.88■□□□□ 0.29
CLIP3-202ENST00000585466 FAM105AQ9NUU6 356 aa16.88■□□□□ 0.29
CLIP3-202ENST00000585466 KIF3AQ9Y496 699 aa16.88■□□□□ 0.29
CLIP3-202ENST00000585466 HOXA2O43364 376 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms