RNA–Protein interactions for RNA: ENST00000580713.1

TOP3A-210, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 474 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-210ENST00000580713 IGSF9Q9P2J2 1179 aa12.19□□□□□ -0.46
TOP3A-210ENST00000580713 WNT16Q9UBV4 365 aa12.19□□□□□ -0.46
TOP3A-210ENST00000580713 PCDHA6Q9UN73 950 aa12.19□□□□□ -0.46
TOP3A-210ENST00000580713 PCDHA8Q9Y5H6 950 aa12.19□□□□□ -0.46
TOP3A-210ENST00000580713 KRBA1A5PL33 1030 aa12.18□□□□□ -0.46
TOP3A-210ENST00000580713 GBP2P32456 591 aaPredicted RBP12.18□□□□□ -0.46
TOP3A-210ENST00000580713 RBM25P49756 843 aaKnown RBP12.18□□□□□ -0.46
TOP3A-210ENST00000580713 TROAPQ12815 778 aa12.18□□□□□ -0.46
TOP3A-210ENST00000580713 GIT2Q14161 759 aa12.18□□□□□ -0.46
TOP3A-210ENST00000580713 ST3GAL2Q16842 350 aa12.18□□□□□ -0.46
TOP3A-210ENST00000580713 ZNF484Q5JVG2 852 aa12.18□□□□□ -0.46
TOP3A-210ENST00000580713 CLLU1OSQ5K130 101 aa12.18□□□□□ -0.46
TOP3A-210ENST00000580713 TRMT1LQ7Z2T5 733 aaKnown RBP12.18□□□□□ -0.46
TOP3A-210ENST00000580713 PPFIBP1Q86W92 1011 aa12.18□□□□□ -0.46
TOP3A-210ENST00000580713 CKAP2LQ8IYA6 745 aa12.18□□□□□ -0.46
TOP3A-210ENST00000580713 SLC22A17Q8WUG5 538 aa12.18□□□□□ -0.46
TOP3A-210ENST00000580713 RSAD2Q8WXG1 361 aa12.18□□□□□ -0.46
TOP3A-210ENST00000580713 ZBP1Q9H171 429 aa12.18□□□□□ -0.46
TOP3A-210ENST00000580713 KCNH7Q9NS40 1196 aa12.18□□□□□ -0.46
TOP3A-210ENST00000580713 NCDNQ9UBB6 729 aa12.18□□□□□ -0.46
TOP3A-210ENST00000580713 OTOGLQ3ZCN5 2332 aa12.18□□□□□ -0.46
TOP3A-210ENST00000580713 NFASCO94856 1347 aa12.17□□□□□ -0.46
TOP3A-210ENST00000580713 DDX39AO00148 427 aaKnown RBP12.17□□□□□ -0.46
TOP3A-210ENST00000580713 KINO60870 393 aaKnown RBP12.17□□□□□ -0.46
TOP3A-210ENST00000580713 ZC3H11AO75152 810 aaKnown RBP eCLIP12.17□□□□□ -0.46
TOP3A-210ENST00000580713 CTSAP10619 480 aa12.17□□□□□ -0.46
TOP3A-210ENST00000580713 SDHBP21912 280 aa12.17□□□□□ -0.46
TOP3A-210ENST00000580713 KLRC2P26717 231 aa12.17□□□□□ -0.46
TOP3A-210ENST00000580713 PDXDC2PQ6P474 469 aa12.17□□□□□ -0.46
TOP3A-210ENST00000580713 RALYLQ86SE5 291 aaKnown RBP12.17□□□□□ -0.46
TOP3A-210ENST00000580713 C1orf210Q8IVY1 113 aa12.17□□□□□ -0.46
TOP3A-210ENST00000580713 CTCFLQ8NI51 663 aaPredicted RBP12.17□□□□□ -0.46
TOP3A-210ENST00000580713 MAP4K1Q92918 833 aa12.17□□□□□ -0.46
TOP3A-210ENST00000580713 MXRA8Q9BRK3 442 aa12.17□□□□□ -0.46
TOP3A-210ENST00000580713 SPZ1Q9BXG8 430 aa12.17□□□□□ -0.46
TOP3A-210ENST00000580713 MRPL9Q9BYD2 267 aaKnown RBP12.17□□□□□ -0.46
TOP3A-210ENST00000580713 SIT1Q9Y3P8 196 aa12.17□□□□□ -0.46
TOP3A-210ENST00000580713 RBM8AQ9Y5S9 174 aaKnown RBP12.17□□□□□ -0.46
TOP3A-210ENST00000580713 COL1A2P08123 1366 aa12.17□□□□□ -0.46
TOP3A-210ENST00000580713 KMT2BQ9UMN6 2715 aaPredicted RBP12.17□□□□□ -0.46
TOP3A-210ENST00000580713 GPR32O75388 356 aa12.16□□□□□ -0.46
TOP3A-210ENST00000580713 KIF5BP33176 963 aa12.16□□□□□ -0.46
TOP3A-210ENST00000580713 POLGP54098 1239 aaPredicted RBP12.16□□□□□ -0.46
TOP3A-210ENST00000580713 LETM2Q2VYF4 491 aa12.16□□□□□ -0.46
TOP3A-210ENST00000580713 KIAA0319Q5VV43 1072 aa12.16□□□□□ -0.46
TOP3A-210ENST00000580713 SCLT1Q96NL6 688 aa12.16□□□□□ -0.46
TOP3A-210ENST00000580713 ZNF302Q9NR11 478 aa12.16□□□□□ -0.46
TOP3A-210ENST00000580713 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.16□□□□□ -0.46
TOP3A-210ENST00000580713 AKT3Q9Y243 479 aa12.16□□□□□ -0.46
TOP3A-210ENST00000580713 IRAK3Q9Y616 596 aa12.16□□□□□ -0.46
TOP3A-210ENST00000580713 EVPLQ92817 2033 aa12.15□□□□□ -0.46
TOP3A-210ENST00000580713 FRYLO94915 3013 aa12.15□□□□□ -0.46
TOP3A-210ENST00000580713 ATG7O95352 703 aa12.15□□□□□ -0.46
TOP3A-210ENST00000580713 SSBP05455 408 aaKnown RBP eCLIP12.15□□□□□ -0.46
TOP3A-210ENST00000580713 HSPA4P34932 840 aa12.15□□□□□ -0.46
TOP3A-210ENST00000580713 CLCN3P51790 818 aa12.15□□□□□ -0.46
TOP3A-210ENST00000580713 ATXN1P54253 815 aaKnown RBP12.15□□□□□ -0.46
TOP3A-210ENST00000580713 NLRP11P59045 1033 aaKnown RBP12.15□□□□□ -0.46
TOP3A-210ENST00000580713 ITGB3BPQ13352 177 aaPredicted RBP12.15□□□□□ -0.46
TOP3A-210ENST00000580713 VARS2Q5ST30 1063 aaKnown RBP12.15□□□□□ -0.46
TOP3A-210ENST00000580713 SWSAP1Q6NVH7 229 aa12.15□□□□□ -0.46
TOP3A-210ENST00000580713 DDX53Q86TM3 631 aaKnown RBP12.15□□□□□ -0.46
TOP3A-210ENST00000580713 TMEM173Q86WV6 379 aaPredicted RBP12.15□□□□□ -0.46
TOP3A-210ENST00000580713 SLC44A3Q8N4M1 653 aa12.15□□□□□ -0.46
TOP3A-210ENST00000580713 SUMF1Q8NBK3 374 aa12.15□□□□□ -0.46
TOP3A-210ENST00000580713 CHAMP1Q96JM3 812 aa12.15□□□□□ -0.46
TOP3A-210ENST00000580713 ZNF668Q96K58 619 aaPredicted RBP12.15□□□□□ -0.46
TOP3A-210ENST00000580713 MAP7D2Q96T17 732 aa12.15□□□□□ -0.46
TOP3A-210ENST00000580713 LZTS2Q9BRK4 669 aa12.15□□□□□ -0.46
TOP3A-210ENST00000580713 MYL10Q9BUA6 226 aa12.15□□□□□ -0.46
TOP3A-210ENST00000580713 EMILIN2Q9BXX0 1053 aa12.15□□□□□ -0.46
TOP3A-210ENST00000580713 AGO4Q9HCK5 861 aaKnown RBP12.15□□□□□ -0.46
TOP3A-210ENST00000580713 CDV3Q9UKY7 258 aaKnown RBP12.15□□□□□ -0.46
TOP3A-210ENST00000580713 BOLA1Q9Y3E2 137 aa12.15□□□□□ -0.46
TOP3A-210ENST00000580713 GPR179Q6PRD1 2367 aa12.15□□□□□ -0.46
TOP3A-210ENST00000580713 DNAH14Q0VDD8 3507 aa12.15□□□□□ -0.47
TOP3A-210ENST00000580713 A0A0U1RQF3 1178 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 hCG_1642624A0A1W2PR95 340 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 C22orf31O95567 290 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 SRFP11831 508 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 FGFR4P22455 802 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 ZNF76P36508 570 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 ANP32AP39687 249 aaKnown RBP12.14□□□□□ -0.47
TOP3A-210ENST00000580713 GNAQP50148 359 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 ANAPC15P60006 121 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 RNASELQ05823 741 aaKnown RBP12.14□□□□□ -0.47
TOP3A-210ENST00000580713 NBR1Q14596 966 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 NECTIN1Q15223 517 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 LONRF3Q496Y0 759 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 RNF20Q5VTR2 975 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 CREB3L3Q68CJ9 461 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 PHLDB3Q6NSJ2 640 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 MIS18BP1Q6P0N0 1132 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 ABHD15Q6UXT9 468 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 C15orf39Q6ZRI6 1047 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 CCDC60Q8IWA6 550 aaPredicted RBP12.14□□□□□ -0.47
TOP3A-210ENST00000580713 GPR161Q8N6U8 529 aaKnown RBP12.14□□□□□ -0.47
TOP3A-210ENST00000580713 GPR152Q8TDT2 470 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 STAMQ92783 540 aa12.14□□□□□ -0.47
TOP3A-210ENST00000580713 SECISBP2LQ93073 1101 aaKnown RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms