RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 LAMTOR4Q0VGL1 99 aa26.63■■□□□ 1.85
SHMT1-206ENST00000579558 PTGDRQ13258 359 aa26.63■■□□□ 1.85
SHMT1-206ENST00000579558 POLR3CQ9BUI4 534 aaPredicted RBP26.63■■□□□ 1.85
SHMT1-206ENST00000579558 XPNPEP1Q9NQW7 623 aa26.63■■□□□ 1.85
SHMT1-206ENST00000579558 TBKBP1A7MCY6 615 aa26.62■■□□□ 1.85
SHMT1-206ENST00000579558 DGAT1O75907 488 aa26.62■■□□□ 1.85
SHMT1-206ENST00000579558 SRGAP2CP0DJJ0 459 aa26.62■■□□□ 1.85
SHMT1-206ENST00000579558 XRCC6P12956 609 aaKnown RBP eCLIP26.62■■□□□ 1.85
SHMT1-206ENST00000579558 FXR2P51116 673 aaKnown RBP eCLIP26.62■■□□□ 1.85
SHMT1-206ENST00000579558 PTPROQ16827 1216 aa26.62■■□□□ 1.85
SHMT1-206ENST00000579558 FAM102BQ5T8I3 360 aa26.62■■□□□ 1.85
SHMT1-206ENST00000579558 LARP1BQ659C4 914 aaKnown RBP26.62■■□□□ 1.85
SHMT1-206ENST00000579558 CATSPER4Q7RTX7 472 aa26.62■■□□□ 1.85
SHMT1-206ENST00000579558 FERMT3Q86UX7 667 aa26.62■■□□□ 1.85
SHMT1-206ENST00000579558 ECHDC2Q86YB7 292 aa26.62■■□□□ 1.85
SHMT1-206ENST00000579558 MRPL38Q96DV4 380 aaKnown RBP26.62■■□□□ 1.85
SHMT1-206ENST00000579558 C11orf84Q9BUA3 381 aaPredicted RBP26.62■■□□□ 1.85
SHMT1-206ENST00000579558 IFT122Q9HBG6 1241 aa26.62■■□□□ 1.85
SHMT1-206ENST00000579558 DACT1Q9NYF0 836 aa26.62■■□□□ 1.85
SHMT1-206ENST00000579558 KIAA1671Q9BY89 1806 aa26.62■■□□□ 1.85
SHMT1-206ENST00000579558 FNDC1Q4ZHG4 1894 aaPredicted RBP26.62■■□□□ 1.85
SHMT1-206ENST00000579558 ASAP2O43150 1006 aa26.61■■□□□ 1.85
SHMT1-206ENST00000579558 FGFR1P11362 822 aa26.61■■□□□ 1.85
SHMT1-206ENST00000579558 RPA1P27694 616 aa26.61■■□□□ 1.85
SHMT1-206ENST00000579558 CUL4AQ13619 759 aa26.61■■□□□ 1.85
SHMT1-206ENST00000579558 RILPL1Q5EBL4 403 aa26.61■■□□□ 1.85
SHMT1-206ENST00000579558 HAUS3Q68CZ6 603 aa26.61■■□□□ 1.85
SHMT1-206ENST00000579558 EIF4ENIF1Q9NRA8 985 aaKnown RBP26.61■■□□□ 1.85
SHMT1-206ENST00000579558 CHST12Q9NRB3 414 aa26.61■■□□□ 1.85
SHMT1-206ENST00000579558 POTEGQ6S5H5 508 aa26.6■■□□□ 1.85
SHMT1-206ENST00000579558 SRGAP1Q7Z6B7 1085 aa26.6■■□□□ 1.85
SHMT1-206ENST00000579558 RNF149Q8NC42 400 aa26.6■■□□□ 1.85
SHMT1-206ENST00000579558 RNF169Q8NCN4 708 aa26.6■■□□□ 1.85
SHMT1-206ENST00000579558 NACC1Q96RE7 527 aa26.6■■□□□ 1.85
SHMT1-206ENST00000579558 PLVAPQ9BX97 442 aa26.6■■□□□ 1.85
SHMT1-206ENST00000579558 LRWD1Q9UFC0 647 aa26.6■■□□□ 1.85
SHMT1-206ENST00000579558 PIN4Q9Y237 131 aaKnown RBP26.6■■□□□ 1.85
SHMT1-206ENST00000579558 A0A0U1RQF3 1178 aa26.59■■□□□ 1.85
SHMT1-206ENST00000579558 LAD1O00515 517 aa26.59■■□□□ 1.85
SHMT1-206ENST00000579558 HOXA2O43364 376 aa26.59■■□□□ 1.85
SHMT1-206ENST00000579558 USO1O60763 962 aaKnown RBP26.59■■□□□ 1.85
SHMT1-206ENST00000579558 MXD4Q14582 209 aaPredicted RBP26.59■■□□□ 1.85
SHMT1-206ENST00000579558 ATXN2LQ8WWM7 1075 aaKnown RBP26.59■■□□□ 1.85
SHMT1-206ENST00000579558 COL25A1Q9BXS0 654 aaPredicted RBP26.59■■□□□ 1.85
SHMT1-206ENST00000579558 RAB34Q9BZG1 259 aa26.59■■□□□ 1.85
SHMT1-206ENST00000579558 DBR1Q9UK59 544 aaKnown RBP26.59■■□□□ 1.85
SHMT1-206ENST00000579558 REV3LO60673 3130 aa26.59■■□□□ 1.85
SHMT1-206ENST00000579558 CCT6AP40227 531 aaKnown RBP26.58■■□□□ 1.85
SHMT1-206ENST00000579558 PHKA2P46019 1235 aa26.58■■□□□ 1.85
SHMT1-206ENST00000579558 SPOUT1Q5T280 376 aaKnown RBP26.58■■□□□ 1.85
SHMT1-206ENST00000579558 TWF2Q6IBS0 349 aaKnown RBP26.58■■□□□ 1.85
SHMT1-206ENST00000579558 TMEM117Q9H0C3 514 aa26.58■■□□□ 1.85
SHMT1-206ENST00000579558 SPTBN5Q9NRC6 3674 aaKnown RBP26.58■■□□□ 1.85
SHMT1-206ENST00000579558 GRM6O15303 877 aa26.57■■□□□ 1.84
SHMT1-206ENST00000579558 MUTP22033 750 aa26.57■■□□□ 1.84
SHMT1-206ENST00000579558 PRPHP41219 470 aa26.57■■□□□ 1.84
SHMT1-206ENST00000579558 TFDP1Q14186 410 aa26.57■■□□□ 1.84
SHMT1-206ENST00000579558 PDIA5Q14554 519 aa26.57■■□□□ 1.84
SHMT1-206ENST00000579558 TIGD5Q53EQ6 642 aa26.57■■□□□ 1.84
SHMT1-206ENST00000579558 ABI1Q8IZP0 508 aa26.57■■□□□ 1.84
SHMT1-206ENST00000579558 IGSF22Q8N9C0 903 aa26.57■■□□□ 1.84
SHMT1-206ENST00000579558 ASAP3Q8TDY4 903 aa26.57■■□□□ 1.84
SHMT1-206ENST00000579558 P2RX5Q93086 422 aa26.57■■□□□ 1.84
SHMT1-206ENST00000579558 MINDY3Q9H8M7 445 aa26.57■■□□□ 1.84
SHMT1-206ENST00000579558 AGPAT5Q9NUQ2 364 aa26.57■■□□□ 1.84
SHMT1-206ENST00000579558 RNF19AQ9NV58 838 aa26.57■■□□□ 1.84
SHMT1-206ENST00000579558 STK24Q9Y6E0 443 aa26.57■■□□□ 1.84
SHMT1-206ENST00000579558 EOMESO95936 686 aa26.56■■□□□ 1.84
SHMT1-206ENST00000579558 ARL2P36404 184 aa26.56■■□□□ 1.84
SHMT1-206ENST00000579558 NAALADL2Q58DX5 795 aa26.56■■□□□ 1.84
SHMT1-206ENST00000579558 DTHD1Q6ZMT9 781 aa26.56■■□□□ 1.84
SHMT1-206ENST00000579558 ZNF598Q86UK7 904 aaKnown RBP26.56■■□□□ 1.84
SHMT1-206ENST00000579558 LMAN2LQ9H0V9 348 aa26.56■■□□□ 1.84
SHMT1-206ENST00000579558 POLR3FQ9H1D9 316 aaPredicted RBP26.56■■□□□ 1.84
SHMT1-206ENST00000579558 TYW1Q9NV66 732 aaKnown RBP26.56■■□□□ 1.84
SHMT1-206ENST00000579558 ARHGEF35A5YM69 484 aa26.55■■□□□ 1.84
SHMT1-206ENST00000579558 ATF7P17544 494 aaPredicted RBP26.55■■□□□ 1.84
SHMT1-206ENST00000579558 MRPS5P82675 430 aaKnown RBP26.55■■□□□ 1.84
SHMT1-206ENST00000579558 CAPSQ13938 189 aa26.55■■□□□ 1.84
SHMT1-206ENST00000579558 TJAP1Q5JTD0 557 aa26.55■■□□□ 1.84
SHMT1-206ENST00000579558 MAEAQ7L5Y9 396 aa26.55■■□□□ 1.84
SHMT1-206ENST00000579558 MCPH1Q8NEM0 835 aa26.55■■□□□ 1.84
SHMT1-206ENST00000579558 SNX29Q8TEQ0 813 aa26.55■■□□□ 1.84
SHMT1-206ENST00000579558 CASD1Q96PB1 797 aa26.55■■□□□ 1.84
SHMT1-206ENST00000579558 TRAIPQ9BWF2 469 aa26.55■■□□□ 1.84
SHMT1-206ENST00000579558 ALG13Q9NP73 1137 aaKnown RBP26.55■■□□□ 1.84
SHMT1-206ENST00000579558 AAASQ9NRG9 546 aa26.55■■□□□ 1.84
SHMT1-206ENST00000579558 HCSTQ9UBK5 93 aa26.55■■□□□ 1.84
SHMT1-206ENST00000579558 COG5Q9UP83 839 aa26.55■■□□□ 1.84
SHMT1-206ENST00000579558 PLAGL2Q9UPG8 496 aa26.55■■□□□ 1.84
SHMT1-206ENST00000579558 SKIP12755 728 aa26.54■■□□□ 1.84
SHMT1-206ENST00000579558 GLRA2P23416 452 aa26.54■■□□□ 1.84
SHMT1-206ENST00000579558 PTENP60484 403 aa26.54■■□□□ 1.84
SHMT1-206ENST00000579558 ATP2C1P98194 919 aaPredicted RBP26.54■■□□□ 1.84
SHMT1-206ENST00000579558 IL17AQ16552 155 aa26.54■■□□□ 1.84
SHMT1-206ENST00000579558 ECM1Q16610 540 aa26.54■■□□□ 1.84
SHMT1-206ENST00000579558 CLLU1OSQ5K130 101 aa26.54■■□□□ 1.84
SHMT1-206ENST00000579558 KLHL23Q8NBE8 558 aa26.54■■□□□ 1.84
SHMT1-206ENST00000579558 ASB2Q96Q27 587 aa26.54■■□□□ 1.84
SHMT1-206ENST00000579558 GPRC5CQ9NQ84 441 aa26.54■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms