RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 MYH15Q9Y2K3 1946 aa18.72■□□□□ 0.59
VPS53-218ENST00000575207 MYO18BQ8IUG5 2567 aa18.72■□□□□ 0.59
VPS53-218ENST00000575207 F5P12259 2224 aa18.72■□□□□ 0.59
VPS53-218ENST00000575207 INPPL1O15357 1258 aa18.71■□□□□ 0.59
VPS53-218ENST00000575207 LILRB3O75022 631 aa18.71■□□□□ 0.59
VPS53-218ENST00000575207 ADCY1Q08828 1119 aa18.71■□□□□ 0.59
VPS53-218ENST00000575207 ZNF252P-AS1Q0IIN9 211 aa18.71■□□□□ 0.59
VPS53-218ENST00000575207 PARM1Q6UWI2 310 aa18.71■□□□□ 0.59
VPS53-218ENST00000575207 GIMAP8Q8ND71 665 aaPredicted RBP18.71■□□□□ 0.59
VPS53-218ENST00000575207 SMG7Q92540 1137 aaKnown RBP18.71■□□□□ 0.59
VPS53-218ENST00000575207 IER2Q9BTL4 223 aa18.71■□□□□ 0.59
VPS53-218ENST00000575207 AMNQ9BXJ7 453 aa18.71■□□□□ 0.59
VPS53-218ENST00000575207 MRPL9Q9BYD2 267 aaKnown RBP18.71■□□□□ 0.59
VPS53-218ENST00000575207 CHRDQ9H2X0 955 aa18.71■□□□□ 0.59
VPS53-218ENST00000575207 DPP7Q9UHL4 492 aa18.71■□□□□ 0.59
VPS53-218ENST00000575207 GINS2Q9Y248 185 aa18.71■□□□□ 0.59
VPS53-218ENST00000575207 MYH6P13533 1939 aa18.7■□□□□ 0.58
VPS53-218ENST00000575207 GIPC1O14908 333 aa18.7■□□□□ 0.58
VPS53-218ENST00000575207 FOXP2O15409 715 aa18.7■□□□□ 0.58
VPS53-218ENST00000575207 GET4Q7L5D6 327 aaPredicted RBP18.7■□□□□ 0.58
VPS53-218ENST00000575207 FAM160A2Q8N612 972 aaPredicted RBP18.7■□□□□ 0.58
VPS53-218ENST00000575207 SEC62Q99442 399 aaKnown RBP18.7■□□□□ 0.58
VPS53-218ENST00000575207 JMJD4Q9H9V9 463 aa18.7■□□□□ 0.58
VPS53-218ENST00000575207 RTEL1Q9NZ71 1219 aa18.7■□□□□ 0.58
VPS53-218ENST00000575207 KALRNO60229 2985 aa18.7■□□□□ 0.58
VPS53-218ENST00000575207 FRMPD4Q14CM0 1322 aa18.7■□□□□ 0.58
VPS53-218ENST00000575207 RAB11FIP3O75154 756 aa18.69■□□□□ 0.58
VPS53-218ENST00000575207 ZKSCAN2Q63HK3 967 aa18.69■□□□□ 0.58
VPS53-218ENST00000575207 ZNF852Q6ZMS4 543 aa18.69■□□□□ 0.58
VPS53-218ENST00000575207 FAM228AQ86W67 206 aa18.69■□□□□ 0.58
VPS53-218ENST00000575207 ECHDC2Q86YB7 292 aa18.69■□□□□ 0.58
VPS53-218ENST00000575207 ZNF687Q8N1G0 1237 aa18.69■□□□□ 0.58
VPS53-218ENST00000575207 GLIS3Q8NEA6 775 aa18.69■□□□□ 0.58
VPS53-218ENST00000575207 BCL7CQ8WUZ0 217 aaPredicted RBP18.69■□□□□ 0.58
VPS53-218ENST00000575207 TNPO1Q92973 898 aaKnown RBP18.69■□□□□ 0.58
VPS53-218ENST00000575207 VN1R3Q9BXE9 311 aa18.69■□□□□ 0.58
VPS53-218ENST00000575207 MRPS17Q9Y2R5 130 aaKnown RBP18.69■□□□□ 0.58
VPS53-218ENST00000575207 ASXL3Q9C0F0 2248 aa18.68■□□□□ 0.58
VPS53-218ENST00000575207 SHISA7A6NL88 538 aa18.68■□□□□ 0.58
VPS53-218ENST00000575207 EIF4E1BA6NMX2 242 aaKnown RBP18.68■□□□□ 0.58
VPS53-218ENST00000575207 RFPL2O75678 378 aa18.68■□□□□ 0.58
VPS53-218ENST00000575207 CCR3P51677 355 aa18.68■□□□□ 0.58
VPS53-218ENST00000575207 ELMSAN1Q6PJG2 1045 aa18.68■□□□□ 0.58
VPS53-218ENST00000575207 TPRG1Q6ZUI0 275 aa18.68■□□□□ 0.58
VPS53-218ENST00000575207 FCHSD1Q86WN1 690 aa18.68■□□□□ 0.58
VPS53-218ENST00000575207 ITPRIPQ8IWB1 547 aa18.68■□□□□ 0.58
VPS53-218ENST00000575207 TRAPPC12Q8WVT3 735 aa18.68■□□□□ 0.58
VPS53-218ENST00000575207 NEUROG3Q9Y4Z2 214 aa18.68■□□□□ 0.58
VPS53-218ENST00000575207 CELSR3Q9NYQ7 3312 aa18.68■□□□□ 0.58
VPS53-218ENST00000575207 ANP32CO43423 234 aa18.67■□□□□ 0.58
VPS53-218ENST00000575207 SRSF5Q13243 272 aaKnown RBP18.67■□□□□ 0.58
VPS53-218ENST00000575207 PLCB4Q15147 1175 aa18.67■□□□□ 0.58
VPS53-218ENST00000575207 C19orf48Q6RUI8 117 aa18.67■□□□□ 0.58
VPS53-218ENST00000575207 MTHFD1LQ6UB35 978 aa18.67■□□□□ 0.58
VPS53-218ENST00000575207 ZNF598Q86UK7 904 aaKnown RBP18.67■□□□□ 0.58
VPS53-218ENST00000575207 PROSER1Q86XN7 944 aa18.67■□□□□ 0.58
VPS53-218ENST00000575207 HELQQ8TDG4 1101 aa18.67■□□□□ 0.58
VPS53-218ENST00000575207 STK39Q9UEW8 545 aa18.67■□□□□ 0.58
VPS53-218ENST00000575207 GCOM1H8Y6P7 765 aaPredicted RBP18.66■□□□□ 0.58
VPS53-218ENST00000575207 POLR2MP0CAP2 368 aa18.66■□□□□ 0.58
VPS53-218ENST00000575207 KIAA0319LQ8IZA0 1049 aa18.66■□□□□ 0.58
VPS53-218ENST00000575207 PHKBQ93100 1093 aa18.66■□□□□ 0.58
VPS53-218ENST00000575207 PCYT2Q99447 389 aa18.66■□□□□ 0.58
VPS53-218ENST00000575207 VAT1LQ9HCJ6 419 aa18.66■□□□□ 0.58
VPS53-218ENST00000575207 TOMM22Q9NS69 142 aa18.66■□□□□ 0.58
VPS53-218ENST00000575207 HECTD1Q9ULT8 2610 aa18.66■□□□□ 0.58
VPS53-218ENST00000575207 PPP1R11O60927 126 aaPredicted RBP18.65■□□□□ 0.58
VPS53-218ENST00000575207 ZC3H11AO75152 810 aaKnown RBP eCLIP18.65■□□□□ 0.58
VPS53-218ENST00000575207 CAPNS1P04632 268 aa18.65■□□□□ 0.58
VPS53-218ENST00000575207 GALTP07902 379 aa18.65■□□□□ 0.58
VPS53-218ENST00000575207 ASPRV1Q53RT3 343 aa18.65■□□□□ 0.58
VPS53-218ENST00000575207 RRP12Q5JTH9 1297 aaKnown RBP18.65■□□□□ 0.58
VPS53-218ENST00000575207 MTSS1LQ765P7 747 aa18.65■□□□□ 0.58
VPS53-218ENST00000575207 HDAC7Q8WUI4 952 aa18.65■□□□□ 0.58
VPS53-218ENST00000575207 RSPH1Q8WYR4 309 aa18.65■□□□□ 0.58
VPS53-218ENST00000575207 LOXL4Q96JB6 756 aa18.65■□□□□ 0.58
VPS53-218ENST00000575207 NT5C3AQ9H0P0 336 aa18.65■□□□□ 0.58
VPS53-218ENST00000575207 ARRDC1-AS1Q9H2J1 176 aa18.65■□□□□ 0.58
VPS53-218ENST00000575207 PIDD1Q9HB75 910 aa18.65■□□□□ 0.58
VPS53-218ENST00000575207 MSRB2Q9Y3D2 182 aa18.65■□□□□ 0.58
VPS53-218ENST00000575207 USP9XQ93008 2570 aaPredicted RBP18.65■□□□□ 0.58
VPS53-218ENST00000575207 ZNF316A6NFI3 1004 aaPredicted RBP18.64■□□□□ 0.57
VPS53-218ENST00000575207 CHURC1-FNTBB4DL54 471 aa18.64■□□□□ 0.57
VPS53-218ENST00000575207 DHX16O60231 1041 aaKnown RBP18.64■□□□□ 0.57
VPS53-218ENST00000575207 ATP9AO75110 1047 aa18.64■□□□□ 0.57
VPS53-218ENST00000575207 KCNA2P16389 499 aa18.64■□□□□ 0.57
VPS53-218ENST00000575207 FNTBP49356 437 aa18.64■□□□□ 0.57
VPS53-218ENST00000575207 CRYBB1P53674 252 aaPredicted RBP18.64■□□□□ 0.57
VPS53-218ENST00000575207 PLA2G2CQ5R387 149 aa18.64■□□□□ 0.57
VPS53-218ENST00000575207 LONP2Q86WA8 852 aa18.64■□□□□ 0.57
VPS53-218ENST00000575207 FTSJ3Q8IY81 847 aaKnown RBP18.64■□□□□ 0.57
VPS53-218ENST00000575207 MRPL17Q9NRX2 175 aaKnown RBP18.64■□□□□ 0.57
VPS53-218ENST00000575207 CDH7Q9ULB5 785 aa18.64■□□□□ 0.57
VPS53-218ENST00000575207 SPTA1P02549 2419 aa18.63■□□□□ 0.57
VPS53-218ENST00000575207 A0A0U1RQF3 1178 aa18.63■□□□□ 0.57
VPS53-218ENST00000575207 ADH1AP07327 375 aa18.63■□□□□ 0.57
VPS53-218ENST00000575207 CXCL12P48061 93 aa18.63■□□□□ 0.57
VPS53-218ENST00000575207 COL28A1Q2UY09 1125 aa18.63■□□□□ 0.57
VPS53-218ENST00000575207 RNF43Q68DV7 783 aa18.63■□□□□ 0.57
VPS53-218ENST00000575207 DGKHQ86XP1 1220 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms