RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 MDM2Q00987 491 aaPredicted RBP20.12■□□□□ 0.81
CCDC40-213ENST00000574933 TMEM62Q0P6H9 643 aa20.12■□□□□ 0.81
CCDC40-213ENST00000574933 CAPSQ13938 189 aa20.12■□□□□ 0.81
CCDC40-213ENST00000574933 TFDP1Q14186 410 aa20.12■□□□□ 0.81
CCDC40-213ENST00000574933 GPNMBQ14956 572 aa20.12■□□□□ 0.81
CCDC40-213ENST00000574933 KIZQ2M2Z5 673 aa20.12■□□□□ 0.81
CCDC40-213ENST00000574933 FAM43BQ6ZT52 329 aaPredicted RBP20.12■□□□□ 0.81
CCDC40-213ENST00000574933 KSR1Q8IVT5 923 aa20.12■□□□□ 0.81
CCDC40-213ENST00000574933 SPIRE2Q8WWL2 714 aa20.12■□□□□ 0.81
CCDC40-213ENST00000574933 STAMQ92783 540 aa20.12■□□□□ 0.81
CCDC40-213ENST00000574933 CCDC34Q96HJ3 373 aa20.12■□□□□ 0.81
CCDC40-213ENST00000574933 CDHR5Q9HBB8 845 aa20.12■□□□□ 0.81
CCDC40-213ENST00000574933 IFT122Q9HBG6 1241 aa20.12■□□□□ 0.81
CCDC40-213ENST00000574933 CAPN15O75808 1086 aa20.11■□□□□ 0.81
CCDC40-213ENST00000574933 CXCL10P02778 98 aa20.11■□□□□ 0.81
CCDC40-213ENST00000574933 KRT18P05783 430 aaKnown RBP20.11■□□□□ 0.81
CCDC40-213ENST00000574933 CTSHP09668 335 aa20.11■□□□□ 0.81
CCDC40-213ENST00000574933 PLS3P13797 630 aa20.11■□□□□ 0.81
CCDC40-213ENST00000574933 PTENP60484 403 aa20.11■□□□□ 0.81
CCDC40-213ENST00000574933 RAD51AP2Q09MP3 1159 aa20.11■□□□□ 0.81
CCDC40-213ENST00000574933 FBXO47Q5MNV8 452 aa20.11■□□□□ 0.81
CCDC40-213ENST00000574933 CDCA2Q69YH5 1023 aaPredicted RBP20.11■□□□□ 0.81
CCDC40-213ENST00000574933 DYMQ7RTS9 669 aa20.11■□□□□ 0.81
CCDC40-213ENST00000574933 SRGAP1Q7Z6B7 1085 aa20.11■□□□□ 0.81
CCDC40-213ENST00000574933 USP38Q8NB14 1042 aa20.11■□□□□ 0.81
CCDC40-213ENST00000574933 IFT74Q96LB3 600 aa20.11■□□□□ 0.81
CCDC40-213ENST00000574933 PARVGQ9HBI0 331 aa20.11■□□□□ 0.81
CCDC40-213ENST00000574933 POLD4Q9HCU8 107 aa20.11■□□□□ 0.81
CCDC40-213ENST00000574933 DACT1Q9NYF0 836 aa20.11■□□□□ 0.81
CCDC40-213ENST00000574933 LARSQ9P2J5 1176 aaKnown RBP20.11■□□□□ 0.81
CCDC40-213ENST00000574933 SEL1LQ9UBV2 794 aa20.11■□□□□ 0.81
CCDC40-213ENST00000574933 TNRC18O15417 2968 aaPredicted RBP20.1■□□□□ 0.81
CCDC40-213ENST00000574933 A0A087WZ62 844 aa20.1■□□□□ 0.81
CCDC40-213ENST00000574933 PVALEFA0A1B0GWK0 134 aa20.1■□□□□ 0.81
CCDC40-213ENST00000574933 KINO60870 393 aaKnown RBP20.1■□□□□ 0.81
CCDC40-213ENST00000574933 TBCAO75347 108 aaKnown RBP20.1■□□□□ 0.81
CCDC40-213ENST00000574933 FAM13AO94988 1023 aa20.1■□□□□ 0.81
CCDC40-213ENST00000574933 DARSP14868 501 aaKnown RBP20.1■□□□□ 0.81
CCDC40-213ENST00000574933 GAP43P17677 238 aa20.1■□□□□ 0.81
CCDC40-213ENST00000574933 EIF4BP23588 611 aaKnown RBP20.1■□□□□ 0.81
CCDC40-213ENST00000574933 AFMP43652 599 aa20.1■□□□□ 0.81
CCDC40-213ENST00000574933 CACNB1Q02641 598 aaPredicted RBP20.1■□□□□ 0.81
CCDC40-213ENST00000574933 GRAMD1CQ8IYS0 662 aa20.1■□□□□ 0.81
CCDC40-213ENST00000574933 TMEM199Q8N511 208 aa20.1■□□□□ 0.81
CCDC40-213ENST00000574933 RNF149Q8NC42 400 aa20.1■□□□□ 0.81
CCDC40-213ENST00000574933 TMEM40Q8WWA1 233 aa20.1■□□□□ 0.81
CCDC40-213ENST00000574933 VWCEQ96DN2 955 aa20.1■□□□□ 0.81
CCDC40-213ENST00000574933 OSMRQ99650 979 aa20.1■□□□□ 0.81
CCDC40-213ENST00000574933 FDXACB1Q9BRP7 624 aaPredicted RBP20.1■□□□□ 0.81
CCDC40-213ENST00000574933 GCOM2Q9BZD3 368 aaPredicted RBP20.1■□□□□ 0.81
CCDC40-213ENST00000574933 INO80BQ9C086 356 aaPredicted RBP20.1■□□□□ 0.81
CCDC40-213ENST00000574933 TTC3P53804 2025 aa20.09■□□□□ 0.81
CCDC40-213ENST00000574933 NBNO60934 754 aa20.09■□□□□ 0.81
CCDC40-213ENST00000574933 SRGAP2CP0DJJ0 459 aa20.09■□□□□ 0.81
CCDC40-213ENST00000574933 MAPTP10636 758 aaKnown RBP20.09■□□□□ 0.81
CCDC40-213ENST00000574933 SCP2P22307 547 aa20.09■□□□□ 0.81
CCDC40-213ENST00000574933 PHKA2P46019 1235 aa20.09■□□□□ 0.81
CCDC40-213ENST00000574933 NPTX2P47972 431 aa20.09■□□□□ 0.81
CCDC40-213ENST00000574933 CCL23P55773 120 aa20.09■□□□□ 0.81
CCDC40-213ENST00000574933 EHHADHQ08426 723 aa20.09■□□□□ 0.81
CCDC40-213ENST00000574933 DMP1Q13316 513 aaPredicted RBP20.09■□□□□ 0.81
CCDC40-213ENST00000574933 CUL4BQ13620 913 aa20.09■□□□□ 0.81
CCDC40-213ENST00000574933 LPIN1Q14693 890 aa20.09■□□□□ 0.81
CCDC40-213ENST00000574933 PCBP1Q15365 356 aaKnown RBP eCLIP20.09■□□□□ 0.81
CCDC40-213ENST00000574933 UNC13DQ70J99 1090 aa20.09■□□□□ 0.81
CCDC40-213ENST00000574933 NLRP7Q8WX94 980 aa20.09■□□□□ 0.81
CCDC40-213ENST00000574933 SCLYQ96I15 445 aa20.09■□□□□ 0.81
CCDC40-213ENST00000574933 NLRP4Q96MN2 994 aa20.09■□□□□ 0.81
CCDC40-213ENST00000574933 FIZ1Q96SL8 496 aa20.09■□□□□ 0.81
CCDC40-213ENST00000574933 OSBPL7Q9BZF2 842 aa20.09■□□□□ 0.81
CCDC40-213ENST00000574933 ARHGAP28Q9P2N2 729 aa20.09■□□□□ 0.81
CCDC40-213ENST00000574933 ZMYND8Q9ULU4 1186 aaPredicted RBP20.09■□□□□ 0.81
CCDC40-213ENST00000574933 SFI1A8K8P3 1242 aa20.08■□□□□ 0.81
CCDC40-213ENST00000574933 KLRC4O43908 158 aa20.08■□□□□ 0.81
CCDC40-213ENST00000574933 PFKMP08237 780 aa20.08■□□□□ 0.81
CCDC40-213ENST00000574933 PEX3P56589 373 aa20.08■□□□□ 0.81
CCDC40-213ENST00000574933 ASIC1P78348 528 aa20.08■□□□□ 0.81
CCDC40-213ENST00000574933 DPYDQ12882 1025 aa20.08■□□□□ 0.81
CCDC40-213ENST00000574933 POSTNQ15063 836 aa20.08■□□□□ 0.81
CCDC40-213ENST00000574933 TSHZ1Q6ZSZ6 1077 aa20.08■□□□□ 0.81
CCDC40-213ENST00000574933 CCDC65Q8IXS2 484 aa20.08■□□□□ 0.81
CCDC40-213ENST00000574933 SLC17A8Q8NDX2 589 aa20.08■□□□□ 0.81
CCDC40-213ENST00000574933 BADQ92934 168 aa20.08■□□□□ 0.81
CCDC40-213ENST00000574933 PPP1R16BQ96T49 567 aa20.08■□□□□ 0.81
CCDC40-213ENST00000574933 C2orf40Q9H1Z8 148 aa20.08■□□□□ 0.81
CCDC40-213ENST00000574933 ST6GALNAC4Q9H4F1 302 aa20.08■□□□□ 0.81
CCDC40-213ENST00000574933 OLFML3Q9NRN5 406 aa20.08■□□□□ 0.81
CCDC40-213ENST00000574933 PANK4Q9NVE7 773 aa20.08■□□□□ 0.81
CCDC40-213ENST00000574933 PHLPP2Q6ZVD8 1323 aa20.07■□□□□ 0.8
CCDC40-213ENST00000574933 ADGRA3Q8IWK6 1321 aa20.07■□□□□ 0.8
CCDC40-213ENST00000574933 LRRIQ4A6NIV6 560 aa20.07■□□□□ 0.8
CCDC40-213ENST00000574933 MBD3O95983 291 aa20.07■□□□□ 0.8
CCDC40-213ENST00000574933 PRR29P0C7W0 189 aa20.07■□□□□ 0.8
CCDC40-213ENST00000574933 SYN1P17600 705 aa20.07■□□□□ 0.8
CCDC40-213ENST00000574933 CASP1P29466 404 aa20.07■□□□□ 0.8
CCDC40-213ENST00000574933 EFNA5P52803 228 aa20.07■□□□□ 0.8
CCDC40-213ENST00000574933 SMTNP53814 917 aa20.07■□□□□ 0.8
CCDC40-213ENST00000574933 NCKAP1LP55160 1127 aa20.07■□□□□ 0.8
CCDC40-213ENST00000574933 MLLT1Q03111 559 aaPredicted RBP20.07■□□□□ 0.8
CCDC40-213ENST00000574933 COASYQ13057 564 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms