RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 ATXN7O15265 892 aaPredicted RBP8.06□□□□□ -1.12
CHD3-213ENST00000571249 NCAM2O15394 837 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 RFPL2O75678 378 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 EIF2AK2P19525 551 aaKnown RBP8.06□□□□□ -1.12
CHD3-213ENST00000571249 RFC5P40937 340 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 METAP2P50579 478 aaKnown RBP eCLIP8.06□□□□□ -1.12
CHD3-213ENST00000571249 CLCN4P51793 760 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 FGD1P98174 961 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 GAS6Q14393 721 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 ERICH6BQ5W0A0 696 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 C15orf39Q6ZRI6 1047 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 GET4Q7L5D6 327 aaPredicted RBP8.06□□□□□ -1.12
CHD3-213ENST00000571249 RSPH3Q86UC2 560 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 KBTBD6Q86V97 674 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 TMEM173Q86WV6 379 aaPredicted RBP8.06□□□□□ -1.12
CHD3-213ENST00000571249 SYTL5Q8TDW5 730 aaPredicted RBP8.06□□□□□ -1.12
CHD3-213ENST00000571249 CASD1Q96PB1 797 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 IWS1Q96ST2 819 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 RMDN3Q96TC7 470 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 PUS7LQ9H0K6 701 aaKnown RBP8.06□□□□□ -1.12
CHD3-213ENST00000571249 ZBP1Q9H171 429 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 CHRDQ9H2X0 955 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 JADE2Q9NQC1 790 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 C2orf42Q9NWW7 574 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 NDRG2Q9UN36 371 aaKnown RBP8.06□□□□□ -1.12
CHD3-213ENST00000571249 STX8Q9UNK0 236 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 POLQO75417 2590 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 LAMA4Q16363 1823 aa8.06□□□□□ -1.12
CHD3-213ENST00000571249 MGAQ8IWI9 3026 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 GSG1L2A8MUP6 293 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 EPN2O95208 641 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 NTRK1P04629 796 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 CSRP1P21291 193 aaKnown RBP8.05□□□□□ -1.12
CHD3-213ENST00000571249 UBA1P22314 1058 aaKnown RBP8.05□□□□□ -1.12
CHD3-213ENST00000571249 RAP1GAPP47736 663 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 CXCL12P48061 93 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 CLK2P49760 499 aaKnown RBP8.05□□□□□ -1.12
CHD3-213ENST00000571249 MRPS6P82932 125 aaKnown RBP8.05□□□□□ -1.12
CHD3-213ENST00000571249 NFX1Q12986 1120 aaKnown RBP8.05□□□□□ -1.12
CHD3-213ENST00000571249 PAK2Q13177 524 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 USH1GQ495M9 461 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 ARHGEF16Q5VV41 709 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 DAB2IPQ5VWQ8 1189 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 TAF2Q6P1X5 1199 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 BTNL9Q6UXG8 535 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 RSPO2Q6UXX9 243 aaPredicted RBP8.05□□□□□ -1.12
CHD3-213ENST00000571249 ZNF852Q6ZMS4 543 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 MAMSTRQ6ZN01 415 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 LONP2Q86WA8 852 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 ZNF513Q8N8E2 541 aaPredicted RBP8.05□□□□□ -1.12
CHD3-213ENST00000571249 SSH3Q8TE77 659 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 DCAF4Q8WV16 495 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 STAMQ92783 540 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 NELL2Q99435 816 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 ADAM2Q99965 735 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 FAM49AQ9H0Q0 323 aaPredicted RBP8.05□□□□□ -1.12
CHD3-213ENST00000571249 CCDC86Q9H6F5 360 aaKnown RBP8.05□□□□□ -1.12
CHD3-213ENST00000571249 MLXIPQ9HAP2 919 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 SCUBE2Q9NQ36 999 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 HEBP1Q9NRV9 189 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 RNF19AQ9NV58 838 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 PNMA2Q9UL42 364 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 NOP58Q9Y2X3 529 aaKnown RBP8.05□□□□□ -1.12
CHD3-213ENST00000571249 LRRK2Q5S007 2527 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 KIAA1217Q5T5P2 1943 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 SETD2Q9BYW2 2564 aaPredicted RBP8.05□□□□□ -1.12
CHD3-213ENST00000571249 SPAG17Q6Q759 2223 aa8.05□□□□□ -1.12
CHD3-213ENST00000571249 COL6A6A6NMZ7 2263 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 LOXHD1Q8IVV2 1947 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 MYH15Q9Y2K3 1946 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 DOCK6Q96HP0 2047 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 C9IYK1 514 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 K7ESF4 209 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 NR3C2P08235 984 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 KLRC2P26717 231 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 CNR2P34972 360 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 PPM1AP35813 382 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 MPLP40238 635 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 CCR3P51677 355 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 UBE3CQ15386 1083 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 MARCH8Q5T0T0 291 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 UTP14CQ5TAP6 766 aaKnown RBP8.04□□□□□ -1.12
CHD3-213ENST00000571249 ZNF707Q96C28 371 aaPredicted RBP8.04□□□□□ -1.12
CHD3-213ENST00000571249 STRBPQ96SI9 672 aaKnown RBP8.04□□□□□ -1.12
CHD3-213ENST00000571249 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.04□□□□□ -1.12
CHD3-213ENST00000571249 LMAN1LQ9HAT1 526 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 ATP6V0A4Q9HBG4 840 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 GDPD2Q9HCC8 539 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 MAN1C1Q9NR34 630 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.04□□□□□ -1.12
CHD3-213ENST00000571249 IRAK3Q9Y616 596 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 PLIN4Q96Q06 1357 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 ATMQ13315 3056 aa8.04□□□□□ -1.12
CHD3-213ENST00000571249 WDR19Q8NEZ3 1342 aa8.03□□□□□ -1.12
CHD3-213ENST00000571249 CDX4O14627 284 aaPredicted RBP8.03□□□□□ -1.12
CHD3-213ENST00000571249 INPPL1O15357 1258 aa8.03□□□□□ -1.12
CHD3-213ENST00000571249 NMT2O60551 498 aa8.03□□□□□ -1.12
CHD3-213ENST00000571249 CNPP09543 421 aaKnown RBP8.03□□□□□ -1.12
CHD3-213ENST00000571249 SPATA31D3P0C874 917 aa8.03□□□□□ -1.12
CHD3-213ENST00000571249 CTSAP10619 480 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms