RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 COL11A1P12107 1806 aaPredicted RBP10.81□□□□□ -0.68
VPS53-206ENST00000570359 ANKRD63C9JTQ0 380 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 ERLIN1O75477 346 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 PPP3CAQ08209 521 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 BFSP1Q12934 665 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 VGLL4Q14135 290 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 ANO5Q75V66 913 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 BSNDQ8WZ55 320 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 TLR10Q9BXR5 811 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 TBC1D22BQ9NU19 505 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 HSPBP1Q9NZL4 362 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 ZNF214Q9UL59 606 aaPredicted RBP10.81□□□□□ -0.68
VPS53-206ENST00000570359 RBBP6Q7Z6E9 1792 aaKnown RBP10.81□□□□□ -0.68
VPS53-206ENST00000570359 DENND3A2RUS2 1198 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 CCDC151A5D8V7 595 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 ZSCAN5CA6NGD5 496 aaPredicted RBP10.8□□□□□ -0.68
VPS53-206ENST00000570359 H3BQF6 201 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 KCNK3O14649 394 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 SLC16A3O15427 465 aaKnown RBP10.8□□□□□ -0.68
VPS53-206ENST00000570359 SLC26A4O43511 780 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 ZNF862O60290 1169 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 PLS3P13797 630 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 GUCY2CP25092 1073 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 PSMC5P62195 406 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 MAPK8IP2Q13387 824 aaPredicted RBP10.8□□□□□ -0.68
VPS53-206ENST00000570359 LLGL1Q15334 1064 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 B3GNT9Q6UX72 402 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 PALB2Q86YC2 1186 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 CREG2Q8IUH2 290 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 ARHGEF19Q8IW93 802 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 CCDC60Q8IWA6 550 aaPredicted RBP10.8□□□□□ -0.68
VPS53-206ENST00000570359 KLHL7Q8IXQ5 586 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 ZC3H3Q8IXZ2 948 aaKnown RBP10.8□□□□□ -0.68
VPS53-206ENST00000570359 ZNF526Q8TF50 670 aaPredicted RBP10.8□□□□□ -0.68
VPS53-206ENST00000570359 TMEM143Q96AN5 459 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 KLRG1Q96E93 195 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 CLMNQ96JQ2 1002 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 LUC7LQ9NQ29 371 aaKnown RBP10.8□□□□□ -0.68
VPS53-206ENST00000570359 RBM12Q9NTZ6 932 aaKnown RBP10.8□□□□□ -0.68
VPS53-206ENST00000570359 RGS20O76081 388 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 MARK3P27448 753 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 SSTR3P32745 418 aaPredicted RBP10.8□□□□□ -0.68
VPS53-206ENST00000570359 DSG3P32926 999 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 STAT1P42224 750 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 ZNF131P52739 623 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 BEND6Q5SZJ8 279 aaPredicted RBP10.8□□□□□ -0.68
VPS53-206ENST00000570359 NAA35Q5VZE5 725 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 PHLDB2Q86SQ0 1253 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 APOBEC3FQ8IUX4 373 aaKnown RBP10.8□□□□□ -0.68
VPS53-206ENST00000570359 PPM1KQ8N3J5 372 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 SLC20A1Q8WUM9 679 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 ACCSQ96QU6 501 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 NUCKS1Q9H1E3 243 aaKnown RBP10.8□□□□□ -0.68
VPS53-206ENST00000570359 OSGEPQ9NPF4 335 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 KMT5AQ9NQR1 393 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 TAS2R14Q9NYV8 317 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 RNF181Q9P0P0 153 aa10.8□□□□□ -0.68
VPS53-206ENST00000570359 KIAA1217Q5T5P2 1943 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 GRID2IPA4D2P6 1211 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 SPDYE16A6NNV3 312 aaPredicted RBP10.79□□□□□ -0.68
VPS53-206ENST00000570359 LRRIQ3A6PVS8 624 aaPredicted RBP10.79□□□□□ -0.68
VPS53-206ENST00000570359 ATMINO43313 823 aaPredicted RBP10.79□□□□□ -0.68
VPS53-206ENST00000570359 ADRB2P07550 413 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 PAFAH1B1P43034 410 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 VAMP7P51809 220 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 GABPB1Q06547 395 aaPredicted RBP10.79□□□□□ -0.68
VPS53-206ENST00000570359 SLC20A2Q08357 652 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 MKRN3Q13064 507 aaKnown RBP10.79□□□□□ -0.68
VPS53-206ENST00000570359 PRPF4BQ13523 1007 aaKnown RBP10.79□□□□□ -0.68
VPS53-206ENST00000570359 BRD3Q15059 726 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 SEZ6Q53EL9 994 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 PHLDB3Q6NSJ2 640 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 PLEKHO2Q8TD55 490 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 NSUN6Q8TEA1 469 aaKnown RBP10.79□□□□□ -0.68
VPS53-206ENST00000570359 RIN2Q8WYP3 895 aaPredicted RBP10.79□□□□□ -0.68
VPS53-206ENST00000570359 PI4K2AQ9BTU6 479 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 TEX13BQ9BXU2 312 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 ACAD9Q9H845 621 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 JPH1Q9HDC5 661 aaPredicted RBP10.79□□□□□ -0.68
VPS53-206ENST00000570359 CYP39A1Q9NYL5 469 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 AIPL1Q9NZN9 384 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 SEL1LQ9UBV2 794 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 DMGDHQ9UI17 866 aaKnown RBP10.79□□□□□ -0.68
VPS53-206ENST00000570359 NAGPAQ9UK23 515 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 ANO9A1A5B4 782 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 F8VZ95 297 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 DDX3XO00571 662 aaKnown RBP eCLIP10.79□□□□□ -0.68
VPS53-206ENST00000570359 HNRNPDLO14979 420 aaKnown RBP10.79□□□□□ -0.68
VPS53-206ENST00000570359 LCA5LO95447 670 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 PGK2P07205 417 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 BCRP11274 1271 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 NPTX2P47972 431 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 PRKCEQ02156 737 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 DMP1Q13316 513 aaPredicted RBP10.79□□□□□ -0.68
VPS53-206ENST00000570359 TUBB2AQ13885 445 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 DAAM2Q86T65 1068 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 MSANTD4Q8NCY6 345 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 SPATA4Q8NEY3 305 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 LNX1Q8TBB1 728 aaPredicted RBP10.79□□□□□ -0.68
VPS53-206ENST00000570359 IFT81Q8WYA0 676 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms