RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 OSBPL6Q9BZF3 934 aa20.62■□□□□ 0.89
CLK3-227ENST00000570296 KANSL1LA0AUZ9 987 aa20.61■□□□□ 0.89
CLK3-227ENST00000570296 ANHXE9PGG2 379 aa20.61■□□□□ 0.89
CLK3-227ENST00000570296 ELMSAN1Q6PJG2 1045 aa20.61■□□□□ 0.89
CLK3-227ENST00000570296 DDX23Q9BUQ8 820 aaKnown RBP20.61■□□□□ 0.89
CLK3-227ENST00000570296 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.61■□□□□ 0.89
CLK3-227ENST00000570296 DPP7Q9UHL4 492 aa20.61■□□□□ 0.89
CLK3-227ENST00000570296 MYH15Q9Y2K3 1946 aa20.61■□□□□ 0.89
CLK3-227ENST00000570296 IGKV6D-21A0A0A0MT36 114 aa20.6■□□□□ 0.89
CLK3-227ENST00000570296 ATG7O95352 703 aa20.6■□□□□ 0.89
CLK3-227ENST00000570296 CNPP09543 421 aaKnown RBP20.6■□□□□ 0.89
CLK3-227ENST00000570296 HTR4Q13639 388 aa20.6■□□□□ 0.89
CLK3-227ENST00000570296 IMMTQ16891 758 aaKnown RBP20.6■□□□□ 0.89
CLK3-227ENST00000570296 BCL7CQ8WUZ0 217 aaPredicted RBP20.6■□□□□ 0.89
CLK3-227ENST00000570296 MAN1C1Q9NR34 630 aa20.6■□□□□ 0.89
CLK3-227ENST00000570296 KCNH7Q9NS40 1196 aa20.6■□□□□ 0.89
CLK3-227ENST00000570296 CCDC195A0A1B0GUA6 201 aa20.59■□□□□ 0.89
CLK3-227ENST00000570296 ZBTB42B2RXF5 422 aa20.59■□□□□ 0.89
CLK3-227ENST00000570296 C22orf31O95567 290 aa20.59■□□□□ 0.89
CLK3-227ENST00000570296 VTNP04004 478 aa20.59■□□□□ 0.89
CLK3-227ENST00000570296 LAMP2P13473 410 aa20.59■□□□□ 0.89
CLK3-227ENST00000570296 FAM160B1Q5W0V3 765 aa20.59■□□□□ 0.89
CLK3-227ENST00000570296 ZNF710Q8N1W2 664 aa20.59■□□□□ 0.89
CLK3-227ENST00000570296 DDX1Q92499 740 aaKnown RBP20.59■□□□□ 0.89
CLK3-227ENST00000570296 VN1R3Q9BXE9 311 aa20.59■□□□□ 0.89
CLK3-227ENST00000570296 FAM126AQ9BYI3 521 aaPredicted RBP20.59■□□□□ 0.89
CLK3-227ENST00000570296 SETXQ7Z333 2677 aaKnown RBP20.59■□□□□ 0.89
CLK3-227ENST00000570296 MYH9P35579 1960 aaKnown RBP20.58■□□□□ 0.89
CLK3-227ENST00000570296 LRP3O75074 770 aa20.58■□□□□ 0.89
CLK3-227ENST00000570296 GALTP07902 379 aa20.58■□□□□ 0.89
CLK3-227ENST00000570296 SHC2P98077 582 aa20.58■□□□□ 0.89
CLK3-227ENST00000570296 PRKCQQ04759 706 aa20.58■□□□□ 0.89
CLK3-227ENST00000570296 PIBF1Q8WXW3 757 aa20.58■□□□□ 0.89
CLK3-227ENST00000570296 DACT1Q9NYF0 836 aa20.58■□□□□ 0.89
CLK3-227ENST00000570296 INPPL1O15357 1258 aa20.57■□□□□ 0.88
CLK3-227ENST00000570296 LILRB3O75022 631 aa20.57■□□□□ 0.88
CLK3-227ENST00000570296 PAPLNO95428 1278 aa20.57■□□□□ 0.88
CLK3-227ENST00000570296 HOXB3P14651 431 aaPredicted RBP20.57■□□□□ 0.88
CLK3-227ENST00000570296 EIF4BP23588 611 aaKnown RBP20.57■□□□□ 0.88
CLK3-227ENST00000570296 PMLP29590 882 aa20.57■□□□□ 0.88
CLK3-227ENST00000570296 TROAPQ12815 778 aa20.57■□□□□ 0.88
CLK3-227ENST00000570296 C20orf194Q5TEA3 1177 aa20.57■□□□□ 0.88
CLK3-227ENST00000570296 SMG7Q92540 1137 aaKnown RBP20.57■□□□□ 0.88
CLK3-227ENST00000570296 PSTPIP2Q9H939 334 aa20.57■□□□□ 0.88
CLK3-227ENST00000570296 MRPL17Q9NRX2 175 aaKnown RBP20.57■□□□□ 0.88
CLK3-227ENST00000570296 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.57■□□□□ 0.88
CLK3-227ENST00000570296 NUMBLQ9Y6R0 609 aa20.57■□□□□ 0.88
CLK3-227ENST00000570296 MTCL1Q9Y4B5 1905 aaKnown RBP20.57■□□□□ 0.88
CLK3-227ENST00000570296 RALGAPA1Q6GYQ0 2036 aa20.56■□□□□ 0.88
CLK3-227ENST00000570296 SPEGQ15772 3267 aa20.56■□□□□ 0.88
CLK3-227ENST00000570296 LOC105378220A0A1B0GUY1 285 aaPredicted RBP20.56■□□□□ 0.88
CLK3-227ENST00000570296 SPDYE3A6NKU9 549 aa20.56■□□□□ 0.88
CLK3-227ENST00000570296 BACH1O14867 736 aa20.56■□□□□ 0.88
CLK3-227ENST00000570296 PDE1AP54750 535 aa20.56■□□□□ 0.88
CLK3-227ENST00000570296 SPEM2Q0P670 501 aa20.56■□□□□ 0.88
CLK3-227ENST00000570296 RSPO2Q6UXX9 243 aaPredicted RBP20.56■□□□□ 0.88
CLK3-227ENST00000570296 METTL13Q8N6R0 699 aa20.56■□□□□ 0.88
CLK3-227ENST00000570296 BBXQ8WY36 941 aaPredicted RBP20.56■□□□□ 0.88
CLK3-227ENST00000570296 COL26A1Q96A83 441 aa20.56■□□□□ 0.88
CLK3-227ENST00000570296 RRP36Q96EU6 259 aaKnown RBP20.56■□□□□ 0.88
CLK3-227ENST00000570296 MXRA8Q9BRK3 442 aa20.56■□□□□ 0.88
CLK3-227ENST00000570296 SPZ1Q9BXG8 430 aa20.56■□□□□ 0.88
CLK3-227ENST00000570296 ADAMTS10Q9H324 1103 aa20.56■□□□□ 0.88
CLK3-227ENST00000570296 NRDE2Q9H7Z3 1164 aa20.56■□□□□ 0.88
CLK3-227ENST00000570296 RAB23Q9ULC3 237 aa20.56■□□□□ 0.88
CLK3-227ENST00000570296 NLRP11P59045 1033 aaKnown RBP20.55■□□□□ 0.88
CLK3-227ENST00000570296 GPC5P78333 572 aa20.55■□□□□ 0.88
CLK3-227ENST00000570296 ITGB3BPQ13352 177 aaPredicted RBP20.55■□□□□ 0.88
CLK3-227ENST00000570296 UBXN2BQ14CS0 331 aa20.55■□□□□ 0.88
CLK3-227ENST00000570296 MLF2Q15773 248 aaPredicted RBP20.55■□□□□ 0.88
CLK3-227ENST00000570296 LAIR1Q6GTX8 287 aa20.55■□□□□ 0.88
CLK3-227ENST00000570296 ABHD15Q6UXT9 468 aa20.55■□□□□ 0.88
CLK3-227ENST00000570296 CYB5R4Q7L1T6 521 aa20.55■□□□□ 0.88
CLK3-227ENST00000570296 DSCC1Q9BVC3 393 aa20.55■□□□□ 0.88
CLK3-227ENST00000570296 PRMT8Q9NR22 394 aaPredicted RBP20.55■□□□□ 0.88
CLK3-227ENST00000570296 TBC1D13Q9NVG8 400 aa20.55■□□□□ 0.88
CLK3-227ENST00000570296 ZBTB47Q9UFB7 747 aaPredicted RBP20.55■□□□□ 0.88
CLK3-227ENST00000570296 SEC63Q9UGP8 760 aaKnown RBP20.55■□□□□ 0.88
CLK3-227ENST00000570296 ZFP37Q9Y6Q3 630 aaPredicted RBP20.55■□□□□ 0.88
CLK3-227ENST00000570296 IGF2RP11717 2491 aa20.55■□□□□ 0.88
CLK3-227ENST00000570296 FAM170BA6NMN3 283 aa20.54■□□□□ 0.88
CLK3-227ENST00000570296 SSBP05455 408 aaKnown RBP eCLIP20.54■□□□□ 0.88
CLK3-227ENST00000570296 ADH1AP07327 375 aa20.54■□□□□ 0.88
CLK3-227ENST00000570296 SNW1Q13573 536 aaKnown RBP20.54■□□□□ 0.88
CLK3-227ENST00000570296 PDXDC2PQ6P474 469 aa20.54■□□□□ 0.88
CLK3-227ENST00000570296 GLB1LQ6UWU2 654 aa20.54■□□□□ 0.88
CLK3-227ENST00000570296 ZNF707Q96C28 371 aaPredicted RBP20.54■□□□□ 0.88
CLK3-227ENST00000570296 MAP7D2Q96T17 732 aa20.54■□□□□ 0.88
CLK3-227ENST00000570296 ZNF302Q9NR11 478 aa20.54■□□□□ 0.88
CLK3-227ENST00000570296 MTF2Q9Y483 593 aaPredicted RBP20.54■□□□□ 0.88
CLK3-227ENST00000570296 GLUD1P00367 558 aa20.53■□□□□ 0.88
CLK3-227ENST00000570296 PROS1P07225 676 aa20.53■□□□□ 0.88
CLK3-227ENST00000570296 RETP07949 1114 aa20.53■□□□□ 0.88
CLK3-227ENST00000570296 SLC11A1P49279 550 aa20.53■□□□□ 0.88
CLK3-227ENST00000570296 RNASELQ05823 741 aaKnown RBP20.53■□□□□ 0.88
CLK3-227ENST00000570296 NOMO2Q5JPE7 1267 aa20.53■□□□□ 0.88
CLK3-227ENST00000570296 CCDC60Q8IWA6 550 aaPredicted RBP20.53■□□□□ 0.88
CLK3-227ENST00000570296 HDAC7Q8WUI4 952 aa20.53■□□□□ 0.88
CLK3-227ENST00000570296 CLDN23Q96B33 292 aa20.53■□□□□ 0.88
CLK3-227ENST00000570296 TRAIPQ9BWF2 469 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms