RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 LRRC43Q8N309 656 aa18.05■□□□□ 0.48
CLN3-229ENST00000567963 RNF169Q8NCN4 708 aa18.05■□□□□ 0.48
CLN3-229ENST00000567963 OXER1Q8TDS5 423 aa18.05■□□□□ 0.48
CLN3-229ENST00000567963 CDCA3Q99618 268 aaPredicted RBP18.05■□□□□ 0.48
CLN3-229ENST00000567963 FDXACB1Q9BRP7 624 aaPredicted RBP18.05■□□□□ 0.48
CLN3-229ENST00000567963 SUCLA2Q9P2R7 463 aaPredicted RBP18.05■□□□□ 0.48
CLN3-229ENST00000567963 PUF60Q9UHX1 559 aaKnown RBP18.05■□□□□ 0.48
CLN3-229ENST00000567963 VAV3Q9UKW4 847 aa18.05■□□□□ 0.48
CLN3-229ENST00000567963 BARX2Q9UMQ3 279 aaPredicted RBP18.05■□□□□ 0.48
CLN3-229ENST00000567963 CCNT1O60563 726 aaKnown RBP18.04■□□□□ 0.48
CLN3-229ENST00000567963 DTNBO60941 627 aa18.04■□□□□ 0.48
CLN3-229ENST00000567963 CTDNEP1O95476 244 aa18.04■□□□□ 0.48
CLN3-229ENST00000567963 GCFC2P16383 781 aaKnown RBP18.04■□□□□ 0.48
CLN3-229ENST00000567963 ATF7P17544 494 aaPredicted RBP18.04■□□□□ 0.48
CLN3-229ENST00000567963 QARSP47897 775 aaKnown RBP18.04■□□□□ 0.48
CLN3-229ENST00000567963 ANAPC15P60006 121 aa18.04■□□□□ 0.48
CLN3-229ENST00000567963 DUSP6Q16828 381 aa18.04■□□□□ 0.48
CLN3-229ENST00000567963 PIK3AP1Q6ZUJ8 805 aa18.04■□□□□ 0.48
CLN3-229ENST00000567963 ZNF410Q86VK4 478 aa18.04■□□□□ 0.48
CLN3-229ENST00000567963 RHPN2Q8IUC4 686 aa18.04■□□□□ 0.48
CLN3-229ENST00000567963 FAM122AQ96E09 287 aa18.04■□□□□ 0.48
CLN3-229ENST00000567963 INO80BQ9C086 356 aaPredicted RBP18.04■□□□□ 0.48
CLN3-229ENST00000567963 FSD2A1L4K1 749 aa18.03■□□□□ 0.48
CLN3-229ENST00000567963 TBX3O15119 743 aa18.03■□□□□ 0.48
CLN3-229ENST00000567963 PPM1AP35813 382 aa18.03■□□□□ 0.48
CLN3-229ENST00000567963 PBX3P40426 434 aa18.03■□□□□ 0.48
CLN3-229ENST00000567963 AK2P54819 239 aa18.03■□□□□ 0.48
CLN3-229ENST00000567963 KRT17Q04695 432 aa18.03■□□□□ 0.48
CLN3-229ENST00000567963 ANKRD1Q15327 319 aa18.03■□□□□ 0.48
CLN3-229ENST00000567963 PLA2G4FQ68DD2 849 aa18.03■□□□□ 0.48
CLN3-229ENST00000567963 HELQQ8TDG4 1101 aa18.03■□□□□ 0.48
CLN3-229ENST00000567963 HAS1Q92839 578 aa18.03■□□□□ 0.48
CLN3-229ENST00000567963 ZNF558Q96NG5 402 aa18.03■□□□□ 0.48
CLN3-229ENST00000567963 JPH2Q9BR39 696 aaPredicted RBP18.03■□□□□ 0.48
CLN3-229ENST00000567963 TRAIPQ9BWF2 469 aa18.03■□□□□ 0.48
CLN3-229ENST00000567963 CYP26B1Q9NR63 512 aa18.03■□□□□ 0.48
CLN3-229ENST00000567963 DKC1O60832 514 aaKnown RBP eCLIP18.02■□□□□ 0.48
CLN3-229ENST00000567963 P4HBP07237 508 aaKnown RBP18.02■□□□□ 0.48
CLN3-229ENST00000567963 SFPQP23246 707 aaKnown RBP eCLIP18.02■□□□□ 0.48
CLN3-229ENST00000567963 PHKA2P46019 1235 aa18.02■□□□□ 0.48
CLN3-229ENST00000567963 RBM10P98175 930 aaKnown RBP18.02■□□□□ 0.48
CLN3-229ENST00000567963 EARS2Q5JPH6 523 aaKnown RBP18.02■□□□□ 0.48
CLN3-229ENST00000567963 PLPP4Q5VZY2 271 aa18.02■□□□□ 0.48
CLN3-229ENST00000567963 KSR1Q8IVT5 923 aa18.02■□□□□ 0.48
CLN3-229ENST00000567963 VN1R2Q8NFZ6 395 aa18.02■□□□□ 0.48
CLN3-229ENST00000567963 NAP1L4Q99733 375 aaKnown RBP18.02■□□□□ 0.48
CLN3-229ENST00000567963 TCF25Q9BQ70 676 aa18.02■□□□□ 0.48
CLN3-229ENST00000567963 NGRNQ9NPE2 291 aaKnown RBP18.02■□□□□ 0.48
CLN3-229ENST00000567963 SPG21Q9NZD8 308 aa18.02■□□□□ 0.48
CLN3-229ENST00000567963 WRAP73Q9P2S5 460 aaPredicted RBP18.02■□□□□ 0.48
CLN3-229ENST00000567963 ORC3Q9UBD5 711 aaPredicted RBP18.02■□□□□ 0.48
CLN3-229ENST00000567963 NPEPPSP55786 919 aa18.01■□□□□ 0.47
CLN3-229ENST00000567963 KCNC3Q14003 757 aa18.01■□□□□ 0.47
CLN3-229ENST00000567963 TMEM184AQ6ZMB5 413 aa18.01■□□□□ 0.47
CLN3-229ENST00000567963 RNF135Q8IUD6 432 aa18.01■□□□□ 0.47
CLN3-229ENST00000567963 ZNF579Q8NAF0 562 aaKnown RBP18.01■□□□□ 0.47
CLN3-229ENST00000567963 WASF1Q92558 559 aa18.01■□□□□ 0.47
CLN3-229ENST00000567963 MRPL9Q9BYD2 267 aaKnown RBP18.01■□□□□ 0.47
CLN3-229ENST00000567963 IFT122Q9HBG6 1241 aa18.01■□□□□ 0.47
CLN3-229ENST00000567963 ENTPD7Q9NQZ7 604 aa18.01■□□□□ 0.47
CLN3-229ENST00000567963 PPP4R2Q9NY27 417 aa18.01■□□□□ 0.47
CLN3-229ENST00000567963 USP15Q9Y4E8 981 aaPredicted RBP18.01■□□□□ 0.47
CLN3-229ENST00000567963 HIDE1A8MVS5 230 aa18.01■□□□□ 0.47
CLN3-229ENST00000567963 FDPSP14324 419 aaKnown RBP18.01■□□□□ 0.47
CLN3-229ENST00000567963 EPHA7Q15375 998 aa18.01■□□□□ 0.47
CLN3-229ENST00000567963 HERC4Q5GLZ8 1057 aaPredicted RBP18.01■□□□□ 0.47
CLN3-229ENST00000567963 TWF2Q6IBS0 349 aaKnown RBP18.01■□□□□ 0.47
CLN3-229ENST00000567963 C4orf19Q8IY42 314 aa18.01■□□□□ 0.47
CLN3-229ENST00000567963 EXOC8Q8IYI6 725 aa18.01■□□□□ 0.47
CLN3-229ENST00000567963 SLC39A11Q8N1S5 342 aa18.01■□□□□ 0.47
CLN3-229ENST00000567963 SLC7A3Q8WY07 619 aa18.01■□□□□ 0.47
CLN3-229ENST00000567963 CEP170P1Q96L14 293 aa18.01■□□□□ 0.47
CLN3-229ENST00000567963 NLRP4Q96MN2 994 aa18.01■□□□□ 0.47
CLN3-229ENST00000567963 DHX33Q9H6R0 707 aaKnown RBP18.01■□□□□ 0.47
CLN3-229ENST00000567963 MUTYHQ9UIF7 546 aa18.01■□□□□ 0.47
CLN3-229ENST00000567963 PIN4Q9Y237 131 aaKnown RBP18.01■□□□□ 0.47
CLN3-229ENST00000567963 PPME1Q9Y570 386 aa18.01■□□□□ 0.47
CLN3-229ENST00000567963 MARCH6O60337 910 aa18■□□□□ 0.47
CLN3-229ENST00000567963 SKIP12755 728 aa18■□□□□ 0.47
CLN3-229ENST00000567963 ALDH7A1P49419 539 aaKnown RBP18■□□□□ 0.47
CLN3-229ENST00000567963 NR5A1Q13285 461 aa18■□□□□ 0.47
CLN3-229ENST00000567963 ME3Q16798 604 aa18■□□□□ 0.47
CLN3-229ENST00000567963 TMC7Q7Z402 723 aa18■□□□□ 0.47
CLN3-229ENST00000567963 POTEDQ86YR6 584 aa18■□□□□ 0.47
CLN3-229ENST00000567963 RSPH1Q8WYR4 309 aa18■□□□□ 0.47
CLN3-229ENST00000567963 LXNQ9BS40 222 aa18■□□□□ 0.47
CLN3-229ENST00000567963 FAM105AQ9NUU6 356 aa18■□□□□ 0.47
CLN3-229ENST00000567963 COL4A3BPQ9Y5P4 624 aa18■□□□□ 0.47
CLN3-229ENST00000567963 LOC730098B7Z3J9 87 aa17.99■□□□□ 0.47
CLN3-229ENST00000567963 ZNF623O75123 536 aa17.99■□□□□ 0.47
CLN3-229ENST00000567963 YWHABP31946 246 aaKnown RBP17.99■□□□□ 0.47
CLN3-229ENST00000567963 KRT2P35908 639 aa17.99■□□□□ 0.47
CLN3-229ENST00000567963 POLGP54098 1239 aaPredicted RBP17.99■□□□□ 0.47
CLN3-229ENST00000567963 BCAR1P56945 870 aa17.99■□□□□ 0.47
CLN3-229ENST00000567963 SPIRE1Q08AE8 756 aa17.99■□□□□ 0.47
CLN3-229ENST00000567963 CATSPER4Q7RTX7 472 aa17.99■□□□□ 0.47
CLN3-229ENST00000567963 SLFN12Q8IYM2 578 aa17.99■□□□□ 0.47
CLN3-229ENST00000567963 NECAB1Q8N987 351 aa17.99■□□□□ 0.47
CLN3-229ENST00000567963 PRPF31Q8WWY3 499 aaKnown RBP17.99■□□□□ 0.47
CLN3-229ENST00000567963 SUSD6Q92537 303 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms