RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 C1orf131Q8NDD1 294 aaKnown RBP6.8□□□□□ -1.32
CLN3-223ENST00000566472 AFAP1L1Q8TED9 768 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 WHAMMQ8TF30 809 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 JDP2Q8WYK2 163 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 KCNN1Q92952 543 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 AGBL1Q96MI9 1066 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 CCDC43Q96MW1 224 aaKnown RBP6.8□□□□□ -1.32
CLN3-223ENST00000566472 TEPSINQ96N21 525 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 PDCD2LQ9BRP1 358 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 PACSIN1Q9BY11 444 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 GLIS2Q9BZE0 524 aaPredicted RBP6.8□□□□□ -1.32
CLN3-223ENST00000566472 TAOK3Q9H2K8 898 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 SLITRK6Q9H5Y7 841 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 SUGCTQ9HAC7 445 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 C17orf75Q9HAS0 396 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 RBM12Q9NTZ6 932 aaKnown RBP6.8□□□□□ -1.32
CLN3-223ENST00000566472 RNF216Q9NWF9 866 aaPredicted RBP6.8□□□□□ -1.32
CLN3-223ENST00000566472 CWC15Q9P013 229 aaKnown RBP6.8□□□□□ -1.32
CLN3-223ENST00000566472 PIM2Q9P1W9 311 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 COL20A1Q9P218 1284 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 KCNG1Q9UIX4 513 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 AJAP1Q9UKB5 411 aaPredicted RBP6.8□□□□□ -1.32
CLN3-223ENST00000566472 TTC7AQ9ULT0 858 aaPredicted RBP6.8□□□□□ -1.32
CLN3-223ENST00000566472 FAN1Q9Y2M0 1017 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 CTDP1Q9Y5B0 961 aaPredicted RBP6.8□□□□□ -1.32
CLN3-223ENST00000566472 ZHX2Q9Y6X8 837 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 ASTN2O75129 1339 aaPredicted RBP6.79□□□□□ -1.32
CLN3-223ENST00000566472 MYPNQ86TC9 1320 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 ANKRD62A6NC57 917 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 GOLGA6BA6NDN3 693 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 H0YCG3 227 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 PGRMC1O00264 195 aaKnown RBP6.79□□□□□ -1.32
CLN3-223ENST00000566472 HSF2BPO75031 334 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 STAM2O75886 525 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 HEXIM1O94992 359 aaKnown RBP6.79□□□□□ -1.32
CLN3-223ENST00000566472 MYBL2P10244 700 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 ALAS1P13196 640 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 HSPA6P17066 643 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 VCAM1P19320 739 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 TNFAIP3P21580 790 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 POLD1P28340 1107 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 CCND2P30279 289 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 YWHABP31946 246 aaKnown RBP6.79□□□□□ -1.32
CLN3-223ENST00000566472 GTF2H1P32780 548 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 ACTN2P35609 894 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 NOP2P46087 812 aaKnown RBP6.79□□□□□ -1.32
CLN3-223ENST00000566472 LMAN1P49257 510 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 CYP2J2P51589 502 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 VAMP7P51809 220 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 RTP1P59025 263 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 MRPS9P82933 396 aaKnown RBP6.79□□□□□ -1.32
CLN3-223ENST00000566472 PPATQ06203 517 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 PPFIA1Q13136 1202 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 CUL1Q13616 776 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 NBPF9Q3BBW0 867 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 CBWD6Q4V339 395 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 EPC2Q52LR7 807 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 DALRD3Q5D0E6 543 aaKnown RBP6.79□□□□□ -1.32
CLN3-223ENST00000566472 CBWD3Q5JTY5 395 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 CBWD5Q5RIA9 395 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 SMYD5Q6GMV2 418 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 C11orf63Q6NUN7 778 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 RNF207Q6ZRF8 634 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 PEX26Q7Z412 305 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 USP37Q86T82 979 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 CDAN1Q8IWY9 1227 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 CD302Q8IX05 232 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 RHOT2Q8IXI1 618 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 SCYL3Q8IZE3 742 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 IL31RAQ8NI17 732 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 OLIG1Q8TAK6 271 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 LMO3Q8TAP4 145 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 LNX1Q8TBB1 728 aaPredicted RBP6.79□□□□□ -1.32
CLN3-223ENST00000566472 MORC4Q8TE76 937 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 U2AF1L4Q8WU68 220 aaKnown RBP6.79□□□□□ -1.32
CLN3-223ENST00000566472 SCFD2Q8WU76 684 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 SPIRE2Q8WWL2 714 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 CTNNBL1Q8WYA6 563 aaPredicted RBP6.79□□□□□ -1.32
CLN3-223ENST00000566472 CDHR1Q96JP9 859 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 FAM81BQ96LP2 452 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 RUFY1Q96T51 708 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 NAP1L3Q99457 506 aaPredicted RBP6.79□□□□□ -1.32
CLN3-223ENST00000566472 SH3GL2Q99962 352 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.79□□□□□ -1.32
CLN3-223ENST00000566472 GPR88Q9GZN0 384 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 ZCCHC17Q9NP64 241 aaKnown RBP6.79□□□□□ -1.32
CLN3-223ENST00000566472 PXMP2Q9NR77 195 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 DMGDHQ9UI17 866 aaKnown RBP6.79□□□□□ -1.32
CLN3-223ENST00000566472 ZNF112Q9UJU3 913 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 AMFRQ9UKV5 643 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 ZHX1Q9UKY1 873 aaPredicted RBP6.79□□□□□ -1.32
CLN3-223ENST00000566472 PPP2R3BQ9Y5P8 575 aa6.79□□□□□ -1.32
CLN3-223ENST00000566472 NFASCO94856 1347 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 MIF4GDA9UHW6 222 aaKnown RBP6.78□□□□□ -1.32
CLN3-223ENST00000566472 C19orf81C9J6K1 198 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 AGPSO00116 658 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 DDX39AO00148 427 aaKnown RBP6.78□□□□□ -1.32
CLN3-223ENST00000566472 KCNK3O14649 394 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 ATP2A1O14983 1001 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 ZBTB39O15060 712 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms