RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ZNF410Q86VK4 478 aa19.24■□□□□ 0.67
CLN3-216ENST00000565316 ABI1Q8IZP0 508 aa19.24■□□□□ 0.67
CLN3-216ENST00000565316 SUSD6Q92537 303 aa19.24■□□□□ 0.67
CLN3-216ENST00000565316 KCNMB3Q9NPA1 279 aa19.24■□□□□ 0.67
CLN3-216ENST00000565316 NGRNQ9NPE2 291 aaKnown RBP19.24■□□□□ 0.67
CLN3-216ENST00000565316 SPG21Q9NZD8 308 aa19.24■□□□□ 0.67
CLN3-216ENST00000565316 MUTYHQ9UIF7 546 aa19.24■□□□□ 0.67
CLN3-216ENST00000565316 VAV3Q9UKW4 847 aa19.24■□□□□ 0.67
CLN3-216ENST00000565316 KCNJ14Q9UNX9 436 aa19.24■□□□□ 0.67
CLN3-216ENST00000565316 DDX11L8A8MPP1 907 aa19.23■□□□□ 0.67
CLN3-216ENST00000565316 EML1O00423 815 aa19.23■□□□□ 0.67
CLN3-216ENST00000565316 CSDE1O75534 798 aaKnown RBP19.23■□□□□ 0.67
CLN3-216ENST00000565316 CDKL5O76039 1030 aa19.23■□□□□ 0.67
CLN3-216ENST00000565316 PSMC5P62195 406 aa19.23■□□□□ 0.67
CLN3-216ENST00000565316 RBM10P98175 930 aaKnown RBP19.23■□□□□ 0.67
CLN3-216ENST00000565316 PPP4R3AQ6IN85 833 aa19.23■□□□□ 0.67
CLN3-216ENST00000565316 RSPH1Q8WYR4 309 aa19.23■□□□□ 0.67
CLN3-216ENST00000565316 FAM20AQ96MK3 541 aa19.23■□□□□ 0.67
CLN3-216ENST00000565316 SH2D3AQ9BRG2 576 aa19.23■□□□□ 0.67
CLN3-216ENST00000565316 SUCLA2Q9P2R7 463 aaPredicted RBP19.23■□□□□ 0.67
CLN3-216ENST00000565316 STK36Q9NRP7 1315 aa19.22■□□□□ 0.67
CLN3-216ENST00000565316 A0A087WZ62 844 aa19.22■□□□□ 0.67
CLN3-216ENST00000565316 PFKFB2O60825 505 aa19.22■□□□□ 0.67
CLN3-216ENST00000565316 PBX3P40426 434 aa19.22■□□□□ 0.67
CLN3-216ENST00000565316 PHKA2P46019 1235 aa19.22■□□□□ 0.67
CLN3-216ENST00000565316 KRT17Q04695 432 aa19.22■□□□□ 0.67
CLN3-216ENST00000565316 LETM2Q2VYF4 491 aa19.22■□□□□ 0.67
CLN3-216ENST00000565316 PLPP4Q5VZY2 271 aa19.22■□□□□ 0.67
CLN3-216ENST00000565316 SLC39A11Q8N1S5 342 aa19.22■□□□□ 0.67
CLN3-216ENST00000565316 RNF169Q8NCN4 708 aa19.22■□□□□ 0.67
CLN3-216ENST00000565316 HELQQ8TDG4 1101 aa19.22■□□□□ 0.67
CLN3-216ENST00000565316 TCF25Q9BQ70 676 aa19.22■□□□□ 0.67
CLN3-216ENST00000565316 JPH2Q9BR39 696 aaPredicted RBP19.22■□□□□ 0.67
CLN3-216ENST00000565316 FDXACB1Q9BRP7 624 aaPredicted RBP19.22■□□□□ 0.67
CLN3-216ENST00000565316 PHF7Q9BWX1 381 aaPredicted RBP19.22■□□□□ 0.67
CLN3-216ENST00000565316 INO80BQ9C086 356 aaPredicted RBP19.22■□□□□ 0.67
CLN3-216ENST00000565316 S1PR5Q9H228 398 aa19.22■□□□□ 0.67
CLN3-216ENST00000565316 CCDC194A0A1B0GVG4 234 aa19.21■□□□□ 0.67
CLN3-216ENST00000565316 HIDE1A8MVS5 230 aa19.21■□□□□ 0.67
CLN3-216ENST00000565316 GCFC2P16383 781 aaKnown RBP19.21■□□□□ 0.67
CLN3-216ENST00000565316 SFPQP23246 707 aaKnown RBP eCLIP19.21■□□□□ 0.67
CLN3-216ENST00000565316 QARSP47897 775 aaKnown RBP19.21■□□□□ 0.67
CLN3-216ENST00000565316 NEK8Q86SG6 692 aa19.21■□□□□ 0.67
CLN3-216ENST00000565316 EDAQ92838 391 aa19.21■□□□□ 0.67
CLN3-216ENST00000565316 MRPL9Q9BYD2 267 aaKnown RBP19.21■□□□□ 0.67
CLN3-216ENST00000565316 SLKQ9H2G2 1235 aaPredicted RBP19.21■□□□□ 0.67
CLN3-216ENST00000565316 ENTPD7Q9NQZ7 604 aa19.21■□□□□ 0.67
CLN3-216ENST00000565316 CYP26B1Q9NR63 512 aa19.21■□□□□ 0.67
CLN3-216ENST00000565316 TPCN1Q9ULQ1 816 aa19.21■□□□□ 0.67
CLN3-216ENST00000565316 TBX3O15119 743 aa19.2■□□□□ 0.66
CLN3-216ENST00000565316 SRGAP2BP0DMP2 458 aa19.2■□□□□ 0.66
CLN3-216ENST00000565316 ANKRD54Q6NXT1 300 aa19.2■□□□□ 0.66
CLN3-216ENST00000565316 HFE2Q6ZVN8 426 aa19.2■□□□□ 0.66
CLN3-216ENST00000565316 RHPN2Q8IUC4 686 aa19.2■□□□□ 0.66
CLN3-216ENST00000565316 HAS1Q92839 578 aa19.2■□□□□ 0.66
CLN3-216ENST00000565316 PPME1Q9Y570 386 aa19.2■□□□□ 0.66
CLN3-216ENST00000565316 DKC1O60832 514 aaKnown RBP eCLIP19.19■□□□□ 0.66
CLN3-216ENST00000565316 ZNF623O75123 536 aa19.19■□□□□ 0.66
CLN3-216ENST00000565316 CTDNEP1O95476 244 aa19.19■□□□□ 0.66
CLN3-216ENST00000565316 P4HBP07237 508 aaKnown RBP19.19■□□□□ 0.66
CLN3-216ENST00000565316 SKIP12755 728 aa19.19■□□□□ 0.66
CLN3-216ENST00000565316 XBP1P17861 261 aa19.19■□□□□ 0.66
CLN3-216ENST00000565316 PLA2G4FQ68DD2 849 aa19.19■□□□□ 0.66
CLN3-216ENST00000565316 SYCE2Q6PIF2 218 aa19.19■□□□□ 0.66
CLN3-216ENST00000565316 TMC7Q7Z402 723 aa19.19■□□□□ 0.66
CLN3-216ENST00000565316 KSR1Q8IVT5 923 aa19.19■□□□□ 0.66
CLN3-216ENST00000565316 MRPL43Q8N983 215 aaKnown RBP19.19■□□□□ 0.66
CLN3-216ENST00000565316 OXER1Q8TDS5 423 aa19.19■□□□□ 0.66
CLN3-216ENST00000565316 NAP1L4Q99733 375 aaKnown RBP19.19■□□□□ 0.66
CLN3-216ENST00000565316 KCNH6Q9H252 994 aa19.19■□□□□ 0.66
CLN3-216ENST00000565316 IFT122Q9HBG6 1241 aa19.19■□□□□ 0.66
CLN3-216ENST00000565316 GJB4Q9NTQ9 266 aa19.19■□□□□ 0.66
CLN3-216ENST00000565316 WRAP73Q9P2S5 460 aaPredicted RBP19.19■□□□□ 0.66
CLN3-216ENST00000565316 TECTAO75443 2155 aa19.18■□□□□ 0.66
CLN3-216ENST00000565316 C2orf71A6NGG8 1288 aa19.18■□□□□ 0.66
CLN3-216ENST00000565316 HOXB8P17481 243 aaPredicted RBP19.18■□□□□ 0.66
CLN3-216ENST00000565316 TECP42680 631 aa19.18■□□□□ 0.66
CLN3-216ENST00000565316 NPEPPSP55786 919 aa19.18■□□□□ 0.66
CLN3-216ENST00000565316 BCAR1P56945 870 aa19.18■□□□□ 0.66
CLN3-216ENST00000565316 ANAPC15P60006 121 aa19.18■□□□□ 0.66
CLN3-216ENST00000565316 TWF2Q6IBS0 349 aaKnown RBP19.18■□□□□ 0.66
CLN3-216ENST00000565316 EXOC8Q8IYI6 725 aa19.18■□□□□ 0.66
CLN3-216ENST00000565316 ZNF579Q8NAF0 562 aaKnown RBP19.18■□□□□ 0.66
CLN3-216ENST00000565316 DHX33Q9H6R0 707 aaKnown RBP19.18■□□□□ 0.66
CLN3-216ENST00000565316 PIN4Q9Y237 131 aaKnown RBP19.18■□□□□ 0.66
CLN3-216ENST00000565316 ZNF318Q5VUA4 2279 aa19.18■□□□□ 0.66
CLN3-216ENST00000565316 CARNS1A5YM72 827 aa19.17■□□□□ 0.66
CLN3-216ENST00000565316 CCNT1O60563 726 aaKnown RBP19.17■□□□□ 0.66
CLN3-216ENST00000565316 ALDH7A1P49419 539 aaKnown RBP19.17■□□□□ 0.66
CLN3-216ENST00000565316 RAB27AP51159 221 aa19.17■□□□□ 0.66
CLN3-216ENST00000565316 SPIRE1Q08AE8 756 aa19.17■□□□□ 0.66
CLN3-216ENST00000565316 SMC1AQ14683 1233 aaKnown RBP19.17■□□□□ 0.66
CLN3-216ENST00000565316 EPHA7Q15375 998 aa19.17■□□□□ 0.66
CLN3-216ENST00000565316 PIK3AP1Q6ZUJ8 805 aa19.17■□□□□ 0.66
CLN3-216ENST00000565316 CATSPER4Q7RTX7 472 aa19.17■□□□□ 0.66
CLN3-216ENST00000565316 BMP8AQ7Z5Y6 402 aa19.17■□□□□ 0.66
CLN3-216ENST00000565316 C4orf19Q8IY42 314 aa19.17■□□□□ 0.66
CLN3-216ENST00000565316 SLC7A3Q8WY07 619 aa19.17■□□□□ 0.66
CLN3-216ENST00000565316 MFSD14AQ96MC6 490 aa19.17■□□□□ 0.66
CLN3-216ENST00000565316 NLRP4Q96MN2 994 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms