RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 TIGD5Q53EQ6 642 aa15.21■□□□□ 0.03
VPS9D1-204ENST00000565023 MCTP1Q6DN14 999 aa15.21■□□□□ 0.03
VPS9D1-204ENST00000565023 ZNF410Q86VK4 478 aa15.21■□□□□ 0.03
VPS9D1-204ENST00000565023 ECHDC2Q86YB7 292 aa15.21■□□□□ 0.03
VPS9D1-204ENST00000565023 KLHL23Q8NBE8 558 aa15.21■□□□□ 0.03
VPS9D1-204ENST00000565023 ADAMTS19Q8TE59 1207 aa15.21■□□□□ 0.03
VPS9D1-204ENST00000565023 PRPF31Q8WWY3 499 aaKnown RBP15.21■□□□□ 0.03
VPS9D1-204ENST00000565023 CLP1Q92989 425 aaKnown RBP15.21■□□□□ 0.03
VPS9D1-204ENST00000565023 MTMR9Q96QG7 549 aa15.21■□□□□ 0.03
VPS9D1-204ENST00000565023 MTRQ99707 1265 aa15.21■□□□□ 0.03
VPS9D1-204ENST00000565023 FOXP1Q9H334 677 aaPredicted RBP15.21■□□□□ 0.03
VPS9D1-204ENST00000565023 TMEM161AQ9NX61 479 aa15.21■□□□□ 0.03
VPS9D1-204ENST00000565023 NOL7Q9UMY1 257 aaKnown RBP15.21■□□□□ 0.03
VPS9D1-204ENST00000565023 PIN4Q9Y237 131 aaKnown RBP15.21■□□□□ 0.03
VPS9D1-204ENST00000565023 KIF3AQ9Y496 699 aa15.21■□□□□ 0.03
VPS9D1-204ENST00000565023 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.21■□□□□ 0.03
VPS9D1-204ENST00000565023 C5orf67F2Z3F1 127 aa15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 ITGB1P05556 798 aa15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 OR52Z1P0C646 297 aa15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 KCNA5P22460 613 aa15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 RFC5P40937 340 aa15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 CDC42EP1Q00587 391 aa15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 AAK1Q2M2I8 961 aa15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 TWF2Q6IBS0 349 aaKnown RBP15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 MAEAQ7L5Y9 396 aa15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 NOSTRINQ8IVI9 506 aa15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 ABI1Q8IZP0 508 aa15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 ZNF710Q8N1W2 664 aa15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 PSPC1Q8WXF1 523 aaKnown RBP15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 INO80BQ9C086 356 aaPredicted RBP15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 NSUN3Q9H649 340 aaKnown RBP15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 IGFLR1Q9H665 355 aa15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 DHX33Q9H6R0 707 aaKnown RBP15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 UBE2ZQ9H832 354 aaPredicted RBP15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 TYW1Q9NV66 732 aaKnown RBP15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 RNF216Q9NWF9 866 aaPredicted RBP15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 PLAGL2Q9UPG8 496 aa15.2■□□□□ 0.02
VPS9D1-204ENST00000565023 K7ELQ4 463 aaPredicted RBP15.19■□□□□ 0.02
VPS9D1-204ENST00000565023 USO1O60763 962 aaKnown RBP15.19■□□□□ 0.02
VPS9D1-204ENST00000565023 GJB2P29033 226 aa15.19■□□□□ 0.02
VPS9D1-204ENST00000565023 FAM189BP81408 668 aa15.19■□□□□ 0.02
VPS9D1-204ENST00000565023 LAMTOR4Q0VGL1 99 aa15.19■□□□□ 0.02
VPS9D1-204ENST00000565023 RNF149Q8NC42 400 aa15.19■□□□□ 0.02
VPS9D1-204ENST00000565023 NEK9Q8TD19 979 aa15.19■□□□□ 0.02
VPS9D1-204ENST00000565023 HELQQ8TDG4 1101 aa15.19■□□□□ 0.02
VPS9D1-204ENST00000565023 POF1BQ8WVV4 589 aa15.19■□□□□ 0.02
VPS9D1-204ENST00000565023 LPPQ93052 612 aa15.19■□□□□ 0.02
VPS9D1-204ENST00000565023 FAM122AQ96E09 287 aa15.19■□□□□ 0.02
VPS9D1-204ENST00000565023 UHRF1Q96T88 793 aaPredicted RBP15.19■□□□□ 0.02
VPS9D1-204ENST00000565023 HSD17B14Q9BPX1 270 aa15.19■□□□□ 0.02
VPS9D1-204ENST00000565023 PLVAPQ9BX97 442 aa15.19■□□□□ 0.02
VPS9D1-204ENST00000565023 ELAC1Q9H777 363 aaKnown RBP15.19■□□□□ 0.02
VPS9D1-204ENST00000565023 XPNPEP1Q9NQW7 623 aa15.19■□□□□ 0.02
VPS9D1-204ENST00000565023 RNF19AQ9NV58 838 aa15.19■□□□□ 0.02
VPS9D1-204ENST00000565023 SMC3Q9UQE7 1217 aa15.19■□□□□ 0.02
VPS9D1-204ENST00000565023 TRANK1O15050 2925 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 H3BQ06 376 aaPredicted RBP15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 MED24O75448 989 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 DNAJB1P25685 340 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 IRS1P35568 1242 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 PBX3P40426 434 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 FERMT3Q86UX7 667 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 EXOC8Q8IYI6 725 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 THNSL1Q8IYQ7 743 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 COLGALT1Q8NBJ5 622 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 SPPL3Q8TCT6 385 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 MICAL1Q8TDZ2 1067 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 TCP11Q8WWU5 503 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 TMEM117Q9H0C3 514 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 LMAN2LQ9H0V9 348 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 IFT122Q9HBG6 1241 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 AAASQ9NRG9 546 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 ANKEF1Q9NU02 776 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 CLDND1Q9NY35 253 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 DACT1Q9NYF0 836 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 PCDHB12Q9Y5F1 795 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 PCDHGC5Q9Y5F6 944 aa15.18■□□□□ 0.02
VPS9D1-204ENST00000565023 H3BQV1 296 aa15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 HOXA2O43364 376 aa15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 BMP1P13497 986 aa15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 GTF2F1P35269 517 aaKnown RBP eCLIP15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 RARRES1P49788 294 aa15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 CLLU1OSQ5K130 101 aa15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 POTEGQ6S5H5 508 aa15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 LRRC55Q6ZSA7 311 aa15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 CATSPER3Q86XQ3 398 aa15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 ERMNQ8TAM6 284 aa15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 ASAP3Q8TDY4 903 aa15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 P2RX5Q93086 422 aa15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 INTS4Q96HW7 963 aaKnown RBP15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 CASD1Q96PB1 797 aa15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 POLR3FQ9H1D9 316 aaPredicted RBP15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 CWH43Q9H720 699 aa15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 MINDY3Q9H8M7 445 aa15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 INPP5FQ9Y2H2 1132 aa15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 PPME1Q9Y570 386 aa15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 PCDHB6Q9Y5E3 794 aa15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 REV3LO60673 3130 aa15.17■□□□□ 0.02
VPS9D1-204ENST00000565023 XIRP2A4UGR9 3374 aa15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 A0A0U1RQF3 1178 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms