RNA–Protein interactions for RNA: ENST00000564676.5

CDH1-206, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 969 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-206ENST00000564676 SF3A1Q15459 793 aaKnown RBP11.06□□□□□ -0.64
CDH1-206ENST00000564676 ZRSR1Q15695 479 aaKnown RBP11.06□□□□□ -0.64
CDH1-206ENST00000564676 ARL6IP4Q66PJ3 421 aaKnown RBP11.06□□□□□ -0.64
CDH1-206ENST00000564676 MAEAQ7L5Y9 396 aa11.06□□□□□ -0.64
CDH1-206ENST00000564676 NPAS4Q8IUM7 802 aa11.06□□□□□ -0.64
CDH1-206ENST00000564676 IGSF22Q8N9C0 903 aa11.06□□□□□ -0.64
CDH1-206ENST00000564676 SPRYD3Q8NCJ5 442 aa11.06□□□□□ -0.64
CDH1-206ENST00000564676 XPNPEP1Q9NQW7 623 aa11.06□□□□□ -0.64
CDH1-206ENST00000564676 C1orf112Q9NSG2 853 aa11.06□□□□□ -0.64
CDH1-206ENST00000564676 DBR1Q9UK59 544 aaKnown RBP11.06□□□□□ -0.64
CDH1-206ENST00000564676 MTMR6Q9Y217 621 aa11.06□□□□□ -0.64
CDH1-206ENST00000564676 PCDHB7Q9Y5E2 793 aa11.06□□□□□ -0.64
CDH1-206ENST00000564676 LINC01553A4QN01 128 aa11.05□□□□□ -0.64
CDH1-206ENST00000564676 MAP3K13O43283 966 aa11.05□□□□□ -0.64
CDH1-206ENST00000564676 IGFBP4P22692 258 aa11.05□□□□□ -0.64
CDH1-206ENST00000564676 SFPQP23246 707 aaKnown RBP eCLIP11.05□□□□□ -0.64
CDH1-206ENST00000564676 CDC25AP30304 524 aa11.05□□□□□ -0.64
CDH1-206ENST00000564676 SARSP49591 514 aaKnown RBP11.05□□□□□ -0.64
CDH1-206ENST00000564676 RESTQ13127 1097 aa11.05□□□□□ -0.64
CDH1-206ENST00000564676 TFDP1Q14186 410 aa11.05□□□□□ -0.64
CDH1-206ENST00000564676 MXD4Q14582 209 aaPredicted RBP11.05□□□□□ -0.64
CDH1-206ENST00000564676 ECM1Q16610 540 aa11.05□□□□□ -0.64
CDH1-206ENST00000564676 PADI6Q6TGC4 694 aa11.05□□□□□ -0.64
CDH1-206ENST00000564676 SLC24A5Q71RS6 500 aa11.05□□□□□ -0.64
CDH1-206ENST00000564676 CATSPER4Q7RTX7 472 aa11.05□□□□□ -0.64
CDH1-206ENST00000564676 FIBCD1Q8N539 461 aa11.05□□□□□ -0.64
CDH1-206ENST00000564676 RNF149Q8NC42 400 aa11.05□□□□□ -0.64
CDH1-206ENST00000564676 TGS1Q96RS0 853 aaKnown RBP11.05□□□□□ -0.64
CDH1-206ENST00000564676 ZSCAN16Q9H4T2 348 aaPredicted RBP11.05□□□□□ -0.64
CDH1-206ENST00000564676 RGS18Q9NS28 235 aa11.05□□□□□ -0.64
CDH1-206ENST00000564676 DDX19AQ9NUU7 478 aaKnown RBP11.05□□□□□ -0.64
CDH1-206ENST00000564676 METRNQ9UJH8 293 aa11.05□□□□□ -0.64
CDH1-206ENST00000564676 MTUS1Q9ULD2 1270 aa11.05□□□□□ -0.64
CDH1-206ENST00000564676 C9IYK1 514 aa11.04□□□□□ -0.64
CDH1-206ENST00000564676 RFXAPO00287 272 aa11.04□□□□□ -0.64
CDH1-206ENST00000564676 ARL2P36404 184 aa11.04□□□□□ -0.64
CDH1-206ENST00000564676 PHKA2P46019 1235 aa11.04□□□□□ -0.64
CDH1-206ENST00000564676 CEBPZQ03701 1054 aaKnown RBP11.04□□□□□ -0.64
CDH1-206ENST00000564676 BTG3Q14201 252 aaPredicted RBP11.04□□□□□ -0.64
CDH1-206ENST00000564676 DSC3Q14574 896 aa11.04□□□□□ -0.64
CDH1-206ENST00000564676 FAM102BQ5T8I3 360 aa11.04□□□□□ -0.64
CDH1-206ENST00000564676 FAM173BQ6P4H8 233 aa11.04□□□□□ -0.64
CDH1-206ENST00000564676 SRGAP1Q7Z6B7 1085 aa11.04□□□□□ -0.64
CDH1-206ENST00000564676 MCPH1Q8NEM0 835 aa11.04□□□□□ -0.64
CDH1-206ENST00000564676 ASAP3Q8TDY4 903 aa11.04□□□□□ -0.64
CDH1-206ENST00000564676 CDK5RAP3Q96JB5 506 aa11.04□□□□□ -0.64
CDH1-206ENST00000564676 POLR3FQ9H1D9 316 aaPredicted RBP11.04□□□□□ -0.64
CDH1-206ENST00000564676 BHMT2Q9H2M3 363 aa11.04□□□□□ -0.64
CDH1-206ENST00000564676 IFT122Q9HBG6 1241 aa11.04□□□□□ -0.64
CDH1-206ENST00000564676 DACT1Q9NYF0 836 aa11.04□□□□□ -0.64
CDH1-206ENST00000564676 DNM3Q9UQ16 869 aa11.04□□□□□ -0.64
CDH1-206ENST00000564676 CLIC4Q9Y696 253 aa11.04□□□□□ -0.64
CDH1-206ENST00000564676 ARID2Q68CP9 1835 aa11.04□□□□□ -0.64
CDH1-206ENST00000564676 E9PMD0 336 aa11.03□□□□□ -0.64
CDH1-206ENST00000564676 DGKIO75912 1065 aa11.03□□□□□ -0.64
CDH1-206ENST00000564676 EYA4O95677 639 aa11.03□□□□□ -0.64
CDH1-206ENST00000564676 PDIA4P13667 645 aaKnown RBP11.03□□□□□ -0.64
CDH1-206ENST00000564676 CYP11B2P19099 503 aa11.03□□□□□ -0.64
CDH1-206ENST00000564676 GLRA2P23416 452 aa11.03□□□□□ -0.64
CDH1-206ENST00000564676 UBA7P41226 1012 aa11.03□□□□□ -0.64
CDH1-206ENST00000564676 ERVK-21P61565 698 aa11.03□□□□□ -0.64
CDH1-206ENST00000564676 PAN2Q504Q3 1202 aaKnown RBP11.03□□□□□ -0.64
CDH1-206ENST00000564676 FOXD4L5Q5VV16 416 aaPredicted RBP11.03□□□□□ -0.64
CDH1-206ENST00000564676 TWF2Q6IBS0 349 aaKnown RBP11.03□□□□□ -0.64
CDH1-206ENST00000564676 SPRED2Q7Z698 418 aa11.03□□□□□ -0.64
CDH1-206ENST00000564676 CABP7Q86V35 215 aa11.03□□□□□ -0.64
CDH1-206ENST00000564676 RNF169Q8NCN4 708 aa11.03□□□□□ -0.64
CDH1-206ENST00000564676 FOXD4L4Q8WXT5 416 aaPredicted RBP11.03□□□□□ -0.64
CDH1-206ENST00000564676 AK8Q96MA6 479 aa11.03□□□□□ -0.64
CDH1-206ENST00000564676 PLIN2Q99541 437 aa11.03□□□□□ -0.64
CDH1-206ENST00000564676 MMTAG2Q9BU76 263 aaKnown RBP11.03□□□□□ -0.64
CDH1-206ENST00000564676 GPRC5CQ9NQ84 441 aa11.03□□□□□ -0.64
CDH1-206ENST00000564676 CHST12Q9NRB3 414 aa11.03□□□□□ -0.64
CDH1-206ENST00000564676 PIN4Q9Y237 131 aaKnown RBP11.03□□□□□ -0.64
CDH1-206ENST00000564676 ADGRA3Q8IWK6 1321 aa11.03□□□□□ -0.64
CDH1-206ENST00000564676 EPOPA6NHQ4 379 aa11.02□□□□□ -0.65
CDH1-206ENST00000564676 LRRIQ4A6NIV6 560 aa11.02□□□□□ -0.65
CDH1-206ENST00000564676 TBKBP1A7MCY6 615 aa11.02□□□□□ -0.65
CDH1-206ENST00000564676 INO80B-WBP1J3KQ70 363 aa11.02□□□□□ -0.65
CDH1-206ENST00000564676 GTPBP6O43824 516 aaPredicted RBP11.02□□□□□ -0.65
CDH1-206ENST00000564676 ERLIN2O94905 339 aa11.02□□□□□ -0.65
CDH1-206ENST00000564676 SSBP05455 408 aaKnown RBP eCLIP11.02□□□□□ -0.65
CDH1-206ENST00000564676 MARCKSP29966 332 aaPredicted RBP11.02□□□□□ -0.65
CDH1-206ENST00000564676 GATMP50440 423 aa11.02□□□□□ -0.65
CDH1-206ENST00000564676 PTENP60484 403 aa11.02□□□□□ -0.65
CDH1-206ENST00000564676 FAM189BP81408 668 aa11.02□□□□□ -0.65
CDH1-206ENST00000564676 POU5F1BQ06416 359 aa11.02□□□□□ -0.65
CDH1-206ENST00000564676 NCBP1Q09161 790 aaKnown RBP11.02□□□□□ -0.65
CDH1-206ENST00000564676 CAPSQ13938 189 aa11.02□□□□□ -0.65
CDH1-206ENST00000564676 ADGRE1Q14246 886 aa11.02□□□□□ -0.65
CDH1-206ENST00000564676 ECHDC2Q86YB7 292 aa11.02□□□□□ -0.65
CDH1-206ENST00000564676 CMTR2Q8IYT2 770 aaKnown RBP11.02□□□□□ -0.65
CDH1-206ENST00000564676 FBXO22Q8NEZ5 403 aa11.02□□□□□ -0.65
CDH1-206ENST00000564676 RASSF8Q8NHQ8 419 aa11.02□□□□□ -0.65
CDH1-206ENST00000564676 MAFAQ8NHW3 353 aaPredicted RBP11.02□□□□□ -0.65
CDH1-206ENST00000564676 ZNF689Q96CS4 500 aaPredicted RBP11.02□□□□□ -0.65
CDH1-206ENST00000564676 CALML4Q96GE6 196 aa11.02□□□□□ -0.65
CDH1-206ENST00000564676 SAMD11Q96NU1 681 aa11.02□□□□□ -0.65
CDH1-206ENST00000564676 C17orf80Q9BSJ5 609 aa11.02□□□□□ -0.65
CDH1-206ENST00000564676 NT5C3AQ9H0P0 336 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms