RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 KMT5BQ4FZB7 885 aa22.8■■□□□ 1.24
CLN3-212ENST00000564574 HERC4Q5GLZ8 1057 aaPredicted RBP22.8■■□□□ 1.24
CLN3-212ENST00000564574 ODR4Q5SWX8 454 aa22.8■■□□□ 1.24
CLN3-212ENST00000564574 ZNF410Q86VK4 478 aa22.8■■□□□ 1.24
CLN3-212ENST00000564574 RHPN2Q8IUC4 686 aa22.8■■□□□ 1.24
CLN3-212ENST00000564574 CAGE1Q8TC20 777 aa22.8■■□□□ 1.24
CLN3-212ENST00000564574 OLFML3Q9NRN5 406 aa22.8■■□□□ 1.24
CLN3-212ENST00000564574 SFI1A8K8P3 1242 aa22.79■■□□□ 1.24
CLN3-212ENST00000564574 H0YCG3 227 aa22.79■■□□□ 1.24
CLN3-212ENST00000564574 RHOBTB3O94955 611 aa22.79■■□□□ 1.24
CLN3-212ENST00000564574 LETM1O95202 739 aaPredicted RBP22.79■■□□□ 1.24
CLN3-212ENST00000564574 SCP2P22307 547 aa22.79■■□□□ 1.24
CLN3-212ENST00000564574 TLE2Q04725 743 aa22.79■■□□□ 1.24
CLN3-212ENST00000564574 LRRC26Q2I0M4 334 aa22.79■■□□□ 1.24
CLN3-212ENST00000564574 TRIM71Q2Q1W2 868 aaKnown RBP22.79■■□□□ 1.24
CLN3-212ENST00000564574 SFR1Q86XK3 245 aa22.79■■□□□ 1.24
CLN3-212ENST00000564574 BSNDQ8WZ55 320 aa22.79■■□□□ 1.24
CLN3-212ENST00000564574 DHX38Q92620 1227 aaKnown RBP22.79■■□□□ 1.24
CLN3-212ENST00000564574 NTPCRQ9BSD7 190 aaKnown RBP22.79■■□□□ 1.24
CLN3-212ENST00000564574 POLD4Q9HCU8 107 aa22.79■■□□□ 1.24
CLN3-212ENST00000564574 ATP11BQ9Y2G3 1177 aa22.79■■□□□ 1.24
CLN3-212ENST00000564574 ALPK3Q96L96 1907 aa22.78■■□□□ 1.24
CLN3-212ENST00000564574 SIP14410 1827 aa22.78■■□□□ 1.24
CLN3-212ENST00000564574 M0QZ92 97 aa22.78■■□□□ 1.24
CLN3-212ENST00000564574 VTNP04004 478 aa22.78■■□□□ 1.24
CLN3-212ENST00000564574 ABCD1P33897 745 aa22.78■■□□□ 1.24
CLN3-212ENST00000564574 GPC3P51654 580 aa22.78■■□□□ 1.24
CLN3-212ENST00000564574 PEX3P56589 373 aa22.78■■□□□ 1.24
CLN3-212ENST00000564574 BFSP2Q13515 415 aa22.78■■□□□ 1.24
CLN3-212ENST00000564574 CAPSQ13938 189 aa22.78■■□□□ 1.24
CLN3-212ENST00000564574 FAM178BQ8IXR5 827 aa22.78■■□□□ 1.24
CLN3-212ENST00000564574 TRIML1Q8N9V2 468 aa22.78■■□□□ 1.24
CLN3-212ENST00000564574 NFKBIZQ9BYH8 718 aa22.78■■□□□ 1.24
CLN3-212ENST00000564574 PHLPP2Q6ZVD8 1323 aa22.78■■□□□ 1.24
CLN3-212ENST00000564574 NPTX2P47972 431 aa22.77■■□□□ 1.24
CLN3-212ENST00000564574 NCKAP1LP55160 1127 aa22.77■■□□□ 1.24
CLN3-212ENST00000564574 NLRP11P59045 1033 aaKnown RBP22.77■■□□□ 1.24
CLN3-212ENST00000564574 MRPS6P82932 125 aaKnown RBP22.77■■□□□ 1.24
CLN3-212ENST00000564574 FAM26FQ5R3K3 315 aa22.77■■□□□ 1.24
CLN3-212ENST00000564574 ERCC4Q92889 916 aaPredicted RBP22.77■■□□□ 1.24
CLN3-212ENST00000564574 KCNN1Q92952 543 aa22.77■■□□□ 1.24
CLN3-212ENST00000564574 WNT8BQ93098 351 aa22.77■■□□□ 1.24
CLN3-212ENST00000564574 C2orf40Q9H1Z8 148 aa22.77■■□□□ 1.24
CLN3-212ENST00000564574 ST6GALNAC4Q9H4F1 302 aa22.77■■□□□ 1.24
CLN3-212ENST00000564574 KMT5AQ9NQR1 393 aa22.77■■□□□ 1.24
CLN3-212ENST00000564574 TRPV2Q9Y5S1 764 aa22.77■■□□□ 1.24
CLN3-212ENST00000564574 TNRC18O15417 2968 aaPredicted RBP22.76■■□□□ 1.23
CLN3-212ENST00000564574 LRRIQ4A6NIV6 560 aa22.76■■□□□ 1.23
CLN3-212ENST00000564574 CCDC169A6NNP5 214 aa22.76■■□□□ 1.23
CLN3-212ENST00000564574 GPR32O75388 356 aa22.76■■□□□ 1.23
CLN3-212ENST00000564574 THPOP40225 353 aa22.76■■□□□ 1.23
CLN3-212ENST00000564574 PHKA2P46019 1235 aa22.76■■□□□ 1.23
CLN3-212ENST00000564574 FAAP100Q0VG06 881 aa22.76■■□□□ 1.23
CLN3-212ENST00000564574 ALCAMQ13740 583 aa22.76■■□□□ 1.23
CLN3-212ENST00000564574 FAM26DQ5JW98 314 aa22.76■■□□□ 1.23
CLN3-212ENST00000564574 CDCA2Q69YH5 1023 aaPredicted RBP22.76■■□□□ 1.23
CLN3-212ENST00000564574 IFNLR1Q8IU57 520 aaPredicted RBP22.76■■□□□ 1.23
CLN3-212ENST00000564574 ZBTB8OSQ8IWT0 167 aa22.76■■□□□ 1.23
CLN3-212ENST00000564574 RNF149Q8NC42 400 aa22.76■■□□□ 1.23
CLN3-212ENST00000564574 DEPTORQ8TB45 409 aa22.76■■□□□ 1.23
CLN3-212ENST00000564574 NLRP7Q8WX94 980 aa22.76■■□□□ 1.23
CLN3-212ENST00000564574 NLRP4Q96MN2 994 aa22.76■■□□□ 1.23
CLN3-212ENST00000564574 FIZ1Q96SL8 496 aa22.76■■□□□ 1.23
CLN3-212ENST00000564574 ADAMTS10Q9H324 1103 aa22.76■■□□□ 1.23
CLN3-212ENST00000564574 MRPL44Q9H9J2 332 aaKnown RBP22.76■■□□□ 1.23
CLN3-212ENST00000564574 MAN1B1Q9UKM7 699 aa22.76■■□□□ 1.23
CLN3-212ENST00000564574 TANC1Q9C0D5 1861 aa22.76■■□□□ 1.23
CLN3-212ENST00000564574 K7ENM7 598 aa22.75■■□□□ 1.23
CLN3-212ENST00000564574 PITPNM1O00562 1244 aa22.75■■□□□ 1.23
CLN3-212ENST00000564574 CLTBP09497 229 aa22.75■■□□□ 1.23
CLN3-212ENST00000564574 SRGAP2CP0DJJ0 459 aa22.75■■□□□ 1.23
CLN3-212ENST00000564574 CRYBB1P53674 252 aaPredicted RBP22.75■■□□□ 1.23
CLN3-212ENST00000564574 PTENP60484 403 aa22.75■■□□□ 1.23
CLN3-212ENST00000564574 MGAT3Q09327 533 aa22.75■■□□□ 1.23
CLN3-212ENST00000564574 STXBP4Q6ZWJ1 553 aa22.75■■□□□ 1.23
CLN3-212ENST00000564574 SRGAP1Q7Z6B7 1085 aa22.75■■□□□ 1.23
CLN3-212ENST00000564574 KSR1Q8IVT5 923 aa22.75■■□□□ 1.23
CLN3-212ENST00000564574 SCLT1Q96NL6 688 aa22.75■■□□□ 1.23
CLN3-212ENST00000564574 HTATIP2Q9BUP3 242 aa22.75■■□□□ 1.23
CLN3-212ENST00000564574 CELF4Q9BZC1 486 aaKnown RBP22.75■■□□□ 1.23
CLN3-212ENST00000564574 GCOM2Q9BZD3 368 aaPredicted RBP22.75■■□□□ 1.23
CLN3-212ENST00000564574 INO80BQ9C086 356 aaPredicted RBP22.75■■□□□ 1.23
CLN3-212ENST00000564574 ARHGAP28Q9P2N2 729 aa22.75■■□□□ 1.23
CLN3-212ENST00000564574 CDY2AQ9Y6F7 541 aa22.75■■□□□ 1.23
CLN3-212ENST00000564574 A0A087WZ62 844 aa22.74■■□□□ 1.23
CLN3-212ENST00000564574 CKBP12277 381 aa22.74■■□□□ 1.23
CLN3-212ENST00000564574 EFNA5P52803 228 aa22.74■■□□□ 1.23
CLN3-212ENST00000564574 TMEM62Q0P6H9 643 aa22.74■■□□□ 1.23
CLN3-212ENST00000564574 MORC3Q14149 939 aa22.74■■□□□ 1.23
CLN3-212ENST00000564574 KIZQ2M2Z5 673 aa22.74■■□□□ 1.23
CLN3-212ENST00000564574 ZNF658Q5TYW1 1059 aaPredicted RBP22.74■■□□□ 1.23
CLN3-212ENST00000564574 ZNF720Q7Z2F6 126 aa22.74■■□□□ 1.23
CLN3-212ENST00000564574 HVCN1Q96D96 273 aa22.74■■□□□ 1.23
CLN3-212ENST00000564574 FDXACB1Q9BRP7 624 aaPredicted RBP22.74■■□□□ 1.23
CLN3-212ENST00000564574 TMEM134Q9H6X4 195 aa22.74■■□□□ 1.23
CLN3-212ENST00000564574 PCDHB13Q9Y5F0 798 aa22.74■■□□□ 1.23
CLN3-212ENST00000564574 PDE4DIPQ5VU43 2346 aa22.73■■□□□ 1.23
CLN3-212ENST00000564574 BRCA2P51587 3418 aa22.73■■□□□ 1.23
CLN3-212ENST00000564574 EIF3DO15371 548 aaKnown RBP eCLIP22.73■■□□□ 1.23
CLN3-212ENST00000564574 SLC16A4O15374 487 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms