RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 CYP26B1Q9NR63 512 aa19.32■□□□□ 0.68
VPS9D1-203ENST00000563798 ATF7P17544 494 aaPredicted RBP19.31■□□□□ 0.68
VPS9D1-203ENST00000563798 NRIP1P48552 1158 aa19.31■□□□□ 0.68
VPS9D1-203ENST00000563798 EPHA7Q15375 998 aa19.31■□□□□ 0.68
VPS9D1-203ENST00000563798 CLLU1OSQ5K130 101 aa19.31■□□□□ 0.68
VPS9D1-203ENST00000563798 C4orf19Q8IY42 314 aa19.31■□□□□ 0.68
VPS9D1-203ENST00000563798 THNSL1Q8IYQ7 743 aa19.31■□□□□ 0.68
VPS9D1-203ENST00000563798 MRPS27Q92552 414 aaKnown RBP19.31■□□□□ 0.68
VPS9D1-203ENST00000563798 GTF3C6Q969F1 213 aa19.31■□□□□ 0.68
VPS9D1-203ENST00000563798 SCLT1Q96NL6 688 aa19.31■□□□□ 0.68
VPS9D1-203ENST00000563798 SUCLA2Q9P2R7 463 aaPredicted RBP19.31■□□□□ 0.68
VPS9D1-203ENST00000563798 A0A087WZ62 844 aa19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 CCNT1O60563 726 aaKnown RBP19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 GLP2RO95838 553 aa19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 SFPQP23246 707 aaKnown RBP eCLIP19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 PPM1AP35813 382 aa19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 NDUFV1P49821 464 aa19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 ERVFC1P60507 584 aa19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 SPIRE1Q08AE8 756 aa19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 ME3Q16798 604 aa19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 EARS2Q5JPH6 523 aaKnown RBP19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 KCNT2Q6UVM3 1135 aa19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 ABI1Q8IZP0 508 aa19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 SMRP1Q8NCR6 262 aa19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 POP1Q99575 1024 aaKnown RBP19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 SH2D3AQ9BRG2 576 aa19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 FDXACB1Q9BRP7 624 aaPredicted RBP19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 DHX33Q9H6R0 707 aaKnown RBP19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 TLE6Q9H808 572 aa19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 WRAP73Q9P2S5 460 aaPredicted RBP19.3■□□□□ 0.68
VPS9D1-203ENST00000563798 ZNF623O75123 536 aa19.29■□□□□ 0.68
VPS9D1-203ENST00000563798 CSPG5O95196 566 aa19.29■□□□□ 0.68
VPS9D1-203ENST00000563798 FGFR4P22455 802 aa19.29■□□□□ 0.68
VPS9D1-203ENST00000563798 KCNC3Q14003 757 aa19.29■□□□□ 0.68
VPS9D1-203ENST00000563798 DUSP6Q16828 381 aa19.29■□□□□ 0.68
VPS9D1-203ENST00000563798 TMEM184AQ6ZMB5 413 aa19.29■□□□□ 0.68
VPS9D1-203ENST00000563798 SLFN12Q8IYM2 578 aa19.29■□□□□ 0.68
VPS9D1-203ENST00000563798 MICAL1Q8TDZ2 1067 aa19.29■□□□□ 0.68
VPS9D1-203ENST00000563798 ZNF558Q96NG5 402 aa19.29■□□□□ 0.68
VPS9D1-203ENST00000563798 MRPL9Q9BYD2 267 aaKnown RBP19.29■□□□□ 0.68
VPS9D1-203ENST00000563798 IFT122Q9HBG6 1241 aa19.29■□□□□ 0.68
VPS9D1-203ENST00000563798 RAPGEFL1Q9UHV5 662 aa19.29■□□□□ 0.68
VPS9D1-203ENST00000563798 PUF60Q9UHX1 559 aaKnown RBP19.29■□□□□ 0.68
VPS9D1-203ENST00000563798 PCDHGC5Q9Y5F6 944 aa19.29■□□□□ 0.68
VPS9D1-203ENST00000563798 CSDE1O75534 798 aaKnown RBP19.28■□□□□ 0.68
VPS9D1-203ENST00000563798 SKIP12755 728 aa19.28■□□□□ 0.68
VPS9D1-203ENST00000563798 KRT2P35908 639 aa19.28■□□□□ 0.68
VPS9D1-203ENST00000563798 RFC5P40937 340 aa19.28■□□□□ 0.68
VPS9D1-203ENST00000563798 PHKA2P46019 1235 aa19.28■□□□□ 0.68
VPS9D1-203ENST00000563798 NPEPPSP55786 919 aa19.28■□□□□ 0.68
VPS9D1-203ENST00000563798 CLUL1Q15846 466 aa19.28■□□□□ 0.68
VPS9D1-203ENST00000563798 PLA2G4FQ68DD2 849 aa19.28■□□□□ 0.68
VPS9D1-203ENST00000563798 RBM23Q86U06 439 aaKnown RBP19.28■□□□□ 0.68
VPS9D1-203ENST00000563798 POTEDQ86YR6 584 aa19.28■□□□□ 0.68
VPS9D1-203ENST00000563798 RHPN2Q8IUC4 686 aa19.28■□□□□ 0.68
VPS9D1-203ENST00000563798 NECAB1Q8N987 351 aa19.28■□□□□ 0.68
VPS9D1-203ENST00000563798 NSUN7Q8NE18 718 aaKnown RBP19.28■□□□□ 0.68
VPS9D1-203ENST00000563798 SLC7A3Q8WY07 619 aa19.28■□□□□ 0.68
VPS9D1-203ENST00000563798 BRMS1Q9HCU9 246 aa19.28■□□□□ 0.68
VPS9D1-203ENST00000563798 NGRNQ9NPE2 291 aaKnown RBP19.28■□□□□ 0.68
VPS9D1-203ENST00000563798 SPG21Q9NZD8 308 aa19.28■□□□□ 0.68
VPS9D1-203ENST00000563798 CARNS1A5YM72 827 aa19.27■□□□□ 0.68
VPS9D1-203ENST00000563798 PRR33A8MZF0 331 aa19.27■□□□□ 0.68
VPS9D1-203ENST00000563798 DCXO43602 365 aa19.27■□□□□ 0.68
VPS9D1-203ENST00000563798 GAS2O43903 313 aaKnown RBP19.27■□□□□ 0.68
VPS9D1-203ENST00000563798 LARGE1O95461 756 aa19.27■□□□□ 0.68
VPS9D1-203ENST00000563798 RAB27AP51159 221 aa19.27■□□□□ 0.68
VPS9D1-203ENST00000563798 NR5A1Q13285 461 aa19.27■□□□□ 0.68
VPS9D1-203ENST00000563798 SLC39A11Q8N1S5 342 aa19.27■□□□□ 0.68
VPS9D1-203ENST00000563798 ZNF579Q8NAF0 562 aaKnown RBP19.27■□□□□ 0.68
VPS9D1-203ENST00000563798 CEP170P1Q96L14 293 aa19.27■□□□□ 0.68
VPS9D1-203ENST00000563798 LXNQ9BS40 222 aa19.27■□□□□ 0.68
VPS9D1-203ENST00000563798 ZSWIM4Q9H7M6 989 aa19.27■□□□□ 0.68
VPS9D1-203ENST00000563798 COL4A3BPQ9Y5P4 624 aa19.27■□□□□ 0.68
VPS9D1-203ENST00000563798 FAM205CA6NFA0 338 aa19.26■□□□□ 0.67
VPS9D1-203ENST00000563798 DTNBO60941 627 aa19.26■□□□□ 0.67
VPS9D1-203ENST00000563798 LYPLA2O95372 231 aa19.26■□□□□ 0.67
VPS9D1-203ENST00000563798 BAG4O95429 457 aaKnown RBP19.26■□□□□ 0.67
VPS9D1-203ENST00000563798 YWHABP31946 246 aaKnown RBP19.26■□□□□ 0.67
VPS9D1-203ENST00000563798 KRT17Q04695 432 aa19.26■□□□□ 0.67
VPS9D1-203ENST00000563798 OTUD6AQ7L8S5 288 aa19.26■□□□□ 0.67
VPS9D1-203ENST00000563798 SRGAP1Q7Z6B7 1085 aa19.26■□□□□ 0.67
VPS9D1-203ENST00000563798 KSR1Q8IVT5 923 aa19.26■□□□□ 0.67
VPS9D1-203ENST00000563798 VN1R2Q8NFZ6 395 aa19.26■□□□□ 0.67
VPS9D1-203ENST00000563798 HELQQ8TDG4 1101 aa19.26■□□□□ 0.67
VPS9D1-203ENST00000563798 RGL1Q9NZL6 768 aa19.26■□□□□ 0.67
VPS9D1-203ENST00000563798 PER2O15055 1255 aa19.25■□□□□ 0.67
VPS9D1-203ENST00000563798 ASAP2O43150 1006 aa19.25■□□□□ 0.67
VPS9D1-203ENST00000563798 MARCH6O60337 910 aa19.25■□□□□ 0.67
VPS9D1-203ENST00000563798 SLITRK3O94933 977 aa19.25■□□□□ 0.67
VPS9D1-203ENST00000563798 NEK4P51957 841 aa19.25■□□□□ 0.67
VPS9D1-203ENST00000563798 POLGP54098 1239 aaPredicted RBP19.25■□□□□ 0.67
VPS9D1-203ENST00000563798 TWF2Q6IBS0 349 aaKnown RBP19.25■□□□□ 0.67
VPS9D1-203ENST00000563798 RNF169Q8NCN4 708 aa19.25■□□□□ 0.67
VPS9D1-203ENST00000563798 TCP11Q8WWU5 503 aa19.25■□□□□ 0.67
VPS9D1-203ENST00000563798 PRPF31Q8WWY3 499 aaKnown RBP19.25■□□□□ 0.67
VPS9D1-203ENST00000563798 PSPC1Q8WXF1 523 aaKnown RBP19.25■□□□□ 0.67
VPS9D1-203ENST00000563798 SUSD6Q92537 303 aa19.25■□□□□ 0.67
VPS9D1-203ENST00000563798 NLRP4Q96MN2 994 aa19.25■□□□□ 0.67
VPS9D1-203ENST00000563798 HSD17B14Q9BPX1 270 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms