RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 ZNF558Q96NG5 402 aa17.69■□□□□ 0.42
CLK3-211ENST00000563297 FDXACB1Q9BRP7 624 aaPredicted RBP17.69■□□□□ 0.42
CLK3-211ENST00000563297 CHST12Q9NRB3 414 aa17.69■□□□□ 0.42
CLK3-211ENST00000563297 DACT1Q9NYF0 836 aa17.69■□□□□ 0.42
CLK3-211ENST00000563297 USP15Q9Y4E8 981 aaPredicted RBP17.69■□□□□ 0.42
CLK3-211ENST00000563297 TECTAO75443 2155 aa17.69■□□□□ 0.42
CLK3-211ENST00000563297 FSD2A1L4K1 749 aa17.68■□□□□ 0.42
CLK3-211ENST00000563297 LOC730098B7Z3J9 87 aa17.68■□□□□ 0.42
CLK3-211ENST00000563297 DTNBO60941 627 aa17.68■□□□□ 0.42
CLK3-211ENST00000563297 HOXD11P31277 338 aaPredicted RBP17.68■□□□□ 0.42
CLK3-211ENST00000563297 PSMC5P62195 406 aa17.68■□□□□ 0.42
CLK3-211ENST00000563297 KRT17Q04695 432 aa17.68■□□□□ 0.42
CLK3-211ENST00000563297 LRRC43Q8N309 656 aa17.68■□□□□ 0.42
CLK3-211ENST00000563297 HELQQ8TDG4 1101 aa17.68■□□□□ 0.42
CLK3-211ENST00000563297 TCF25Q9BQ70 676 aa17.68■□□□□ 0.42
CLK3-211ENST00000563297 NGRNQ9NPE2 291 aaKnown RBP17.68■□□□□ 0.42
CLK3-211ENST00000563297 GJB4Q9NTQ9 266 aa17.68■□□□□ 0.42
CLK3-211ENST00000563297 SPG21Q9NZD8 308 aa17.68■□□□□ 0.42
CLK3-211ENST00000563297 SUCLA2Q9P2R7 463 aaPredicted RBP17.68■□□□□ 0.42
CLK3-211ENST00000563297 HIDE1A8MVS5 230 aa17.67■□□□□ 0.42
CLK3-211ENST00000563297 PPM1AP35813 382 aa17.67■□□□□ 0.42
CLK3-211ENST00000563297 PPP2R5CQ13362 524 aa17.67■□□□□ 0.42
CLK3-211ENST00000563297 PPP4R3AQ6IN85 833 aa17.67■□□□□ 0.42
CLK3-211ENST00000563297 ZNF410Q86VK4 478 aa17.67■□□□□ 0.42
CLK3-211ENST00000563297 RHPN2Q8IUC4 686 aa17.67■□□□□ 0.42
CLK3-211ENST00000563297 KSR1Q8IVT5 923 aa17.67■□□□□ 0.42
CLK3-211ENST00000563297 SUSD6Q92537 303 aa17.67■□□□□ 0.42
CLK3-211ENST00000563297 FAM20AQ96MK3 541 aa17.67■□□□□ 0.42
CLK3-211ENST00000563297 TRAIPQ9BWF2 469 aa17.67■□□□□ 0.42
CLK3-211ENST00000563297 PHF7Q9BWX1 381 aaPredicted RBP17.67■□□□□ 0.42
CLK3-211ENST00000563297 INO80BQ9C086 356 aaPredicted RBP17.67■□□□□ 0.42
CLK3-211ENST00000563297 SLKQ9H2G2 1235 aaPredicted RBP17.67■□□□□ 0.42
CLK3-211ENST00000563297 KCNMB3Q9NPA1 279 aa17.67■□□□□ 0.42
CLK3-211ENST00000563297 ENTPD7Q9NQZ7 604 aa17.67■□□□□ 0.42
CLK3-211ENST00000563297 VAV3Q9UKW4 847 aa17.67■□□□□ 0.42
CLK3-211ENST00000563297 TPCN1Q9ULQ1 816 aa17.67■□□□□ 0.42
CLK3-211ENST00000563297 CCDC194A0A1B0GVG4 234 aa17.66■□□□□ 0.42
CLK3-211ENST00000563297 PFKFB2O60825 505 aa17.66■□□□□ 0.42
CLK3-211ENST00000563297 CDKL5O76039 1030 aa17.66■□□□□ 0.42
CLK3-211ENST00000563297 PHKA2P46019 1235 aa17.66■□□□□ 0.42
CLK3-211ENST00000563297 QARSP47897 775 aaKnown RBP17.66■□□□□ 0.42
CLK3-211ENST00000563297 NPEPPSP55786 919 aa17.66■□□□□ 0.42
CLK3-211ENST00000563297 CBX2Q14781 532 aaPredicted RBP17.66■□□□□ 0.42
CLK3-211ENST00000563297 PLA2G4FQ68DD2 849 aa17.66■□□□□ 0.42
CLK3-211ENST00000563297 HFE2Q6ZVN8 426 aa17.66■□□□□ 0.42
CLK3-211ENST00000563297 TMC7Q7Z402 723 aa17.66■□□□□ 0.42
CLK3-211ENST00000563297 NEK8Q86SG6 692 aa17.66■□□□□ 0.42
CLK3-211ENST00000563297 SLC39A11Q8N1S5 342 aa17.66■□□□□ 0.42
CLK3-211ENST00000563297 ZNF579Q8NAF0 562 aaKnown RBP17.66■□□□□ 0.42
CLK3-211ENST00000563297 OXER1Q8TDS5 423 aa17.66■□□□□ 0.42
CLK3-211ENST00000563297 EDAQ92838 391 aa17.66■□□□□ 0.42
CLK3-211ENST00000563297 HAS1Q92839 578 aa17.66■□□□□ 0.42
CLK3-211ENST00000563297 S1PR5Q9H228 398 aa17.66■□□□□ 0.42
CLK3-211ENST00000563297 CYP26B1Q9NR63 512 aa17.66■□□□□ 0.42
CLK3-211ENST00000563297 NT5C1B-RDH14C9J2C7 533 aa17.65■□□□□ 0.42
CLK3-211ENST00000563297 CTDNEP1O95476 244 aa17.65■□□□□ 0.42
CLK3-211ENST00000563297 GCFC2P16383 781 aaKnown RBP17.65■□□□□ 0.42
CLK3-211ENST00000563297 SFPQP23246 707 aaKnown RBP eCLIP17.65■□□□□ 0.42
CLK3-211ENST00000563297 TECP42680 631 aa17.65■□□□□ 0.42
CLK3-211ENST00000563297 BCAR1P56945 870 aa17.65■□□□□ 0.42
CLK3-211ENST00000563297 ANKRD54Q6NXT1 300 aa17.65■□□□□ 0.42
CLK3-211ENST00000563297 SYCE2Q6PIF2 218 aa17.65■□□□□ 0.42
CLK3-211ENST00000563297 MRPL43Q8N983 215 aaKnown RBP17.65■□□□□ 0.42
CLK3-211ENST00000563297 RPGRIP1Q96KN7 1286 aa17.65■□□□□ 0.42
CLK3-211ENST00000563297 JPH2Q9BR39 696 aaPredicted RBP17.65■□□□□ 0.42
CLK3-211ENST00000563297 WRAP73Q9P2S5 460 aaPredicted RBP17.65■□□□□ 0.42
CLK3-211ENST00000563297 STK36Q9NRP7 1315 aa17.65■□□□□ 0.42
CLK3-211ENST00000563297 ZNF318Q5VUA4 2279 aa17.64■□□□□ 0.41
CLK3-211ENST00000563297 CCNT1O60563 726 aaKnown RBP17.64■□□□□ 0.41
CLK3-211ENST00000563297 DKC1O60832 514 aaKnown RBP eCLIP17.64■□□□□ 0.41
CLK3-211ENST00000563297 P4HBP07237 508 aaKnown RBP17.64■□□□□ 0.41
CLK3-211ENST00000563297 XBP1P17861 261 aa17.64■□□□□ 0.41
CLK3-211ENST00000563297 ALDH7A1P49419 539 aaKnown RBP17.64■□□□□ 0.41
CLK3-211ENST00000563297 LONRF3Q496Y0 759 aa17.64■□□□□ 0.41
CLK3-211ENST00000563297 TWF2Q6IBS0 349 aaKnown RBP17.64■□□□□ 0.41
CLK3-211ENST00000563297 LLGL2Q6P1M3 1020 aa17.64■□□□□ 0.41
CLK3-211ENST00000563297 PIK3AP1Q6ZUJ8 805 aa17.64■□□□□ 0.41
CLK3-211ENST00000563297 LPPQ93052 612 aa17.64■□□□□ 0.41
CLK3-211ENST00000563297 NLRP4Q96MN2 994 aa17.64■□□□□ 0.41
CLK3-211ENST00000563297 MRPL9Q9BYD2 267 aaKnown RBP17.64■□□□□ 0.41
CLK3-211ENST00000563297 IFT122Q9HBG6 1241 aa17.64■□□□□ 0.41
CLK3-211ENST00000563297 PIN4Q9Y237 131 aaKnown RBP17.64■□□□□ 0.41
CLK3-211ENST00000563297 MYO10Q9HD67 2058 aa17.63■□□□□ 0.41
CLK3-211ENST00000563297 C2orf71A6NGG8 1288 aa17.63■□□□□ 0.41
CLK3-211ENST00000563297 TBX3O15119 743 aa17.63■□□□□ 0.41
CLK3-211ENST00000563297 ZNF623O75123 536 aa17.63■□□□□ 0.41
CLK3-211ENST00000563297 SRGAP2BP0DMP2 458 aa17.63■□□□□ 0.41
CLK3-211ENST00000563297 SKIP12755 728 aa17.63■□□□□ 0.41
CLK3-211ENST00000563297 EPHA7Q15375 998 aa17.63■□□□□ 0.41
CLK3-211ENST00000563297 EARS2Q5JPH6 523 aaKnown RBP17.63■□□□□ 0.41
CLK3-211ENST00000563297 CATSPER4Q7RTX7 472 aa17.63■□□□□ 0.41
CLK3-211ENST00000563297 C4orf19Q8IY42 314 aa17.63■□□□□ 0.41
CLK3-211ENST00000563297 PRPF31Q8WWY3 499 aaKnown RBP17.63■□□□□ 0.41
CLK3-211ENST00000563297 CEP170P1Q96L14 293 aa17.63■□□□□ 0.41
CLK3-211ENST00000563297 DHX33Q9H6R0 707 aaKnown RBP17.63■□□□□ 0.41
CLK3-211ENST00000563297 FAM105AQ9NUU6 356 aa17.63■□□□□ 0.41
CLK3-211ENST00000563297 RGL1Q9NZL6 768 aa17.63■□□□□ 0.41
CLK3-211ENST00000563297 ORC3Q9UBD5 711 aaPredicted RBP17.63■□□□□ 0.41
CLK3-211ENST00000563297 MEIS3P2A8K0S8 358 aa17.62■□□□□ 0.41
CLK3-211ENST00000563297 OFD1O75665 1012 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms