RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 DEKP35659 375 aaKnown RBP3.19□□□□□ -1.9
SPG11-223ENST00000560858 RGS19P49795 217 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 MRE11P49959 708 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 RACK1P63244 317 aaKnown RBP3.19□□□□□ -1.9
SPG11-223ENST00000560858 PAK2Q13177 524 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 COLEC12Q5KU26 742 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 SLC35F1Q5T1Q4 408 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 TRIM68Q6AZZ1 485 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 LARP4Q71RC2 724 aaKnown RBP eCLIP3.19□□□□□ -1.9
SPG11-223ENST00000560858 GAREM2Q75VX8 874 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 FILIP1Q7Z7B0 1213 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 VRK3Q8IV63 474 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 RTKN2Q8IZC4 609 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 ZNF654Q8IZM8 581 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 EXOC6Q8TAG9 804 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 GIPC2Q8TF65 315 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 SLC25A43Q8WUT9 341 aaPredicted RBP3.19□□□□□ -1.9
SPG11-223ENST00000560858 MIEF2Q96C03 454 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 SHDQ96IW2 340 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 KCNJ15Q99712 375 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 BACH2Q9BYV9 841 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 DDX41Q9UJV9 622 aaKnown RBP3.19□□□□□ -1.9
SPG11-223ENST00000560858 FAM184BQ9ULE4 1060 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 ABCC3O15438 1527 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 TULP4Q9NRJ4 1543 aa3.19□□□□□ -1.9
SPG11-223ENST00000560858 PREX1Q8TCU6 1659 aa3.18□□□□□ -1.9
SPG11-223ENST00000560858 DIP2CQ9Y2E4 1556 aa3.18□□□□□ -1.9
SPG11-223ENST00000560858 NKRFO15226 690 aaKnown RBP eCLIP3.18□□□□□ -1.9
SPG11-223ENST00000560858 PPFIA4O75335 1185 aa3.18□□□□□ -1.9
SPG11-223ENST00000560858 MAN2A2P49641 1150 aa3.18□□□□□ -1.9
SPG11-223ENST00000560858 TMF1P82094 1093 aa3.18□□□□□ -1.9
SPG11-223ENST00000560858 FANCCQ00597 558 aa3.18□□□□□ -1.9
SPG11-223ENST00000560858 LY6G5CQ5SRR4 150 aa3.18□□□□□ -1.9
SPG11-223ENST00000560858 ZNF362Q5T0B9 420 aaPredicted RBP3.18□□□□□ -1.9
SPG11-223ENST00000560858 PAPD7Q5XG87 772 aaKnown RBP3.18□□□□□ -1.9
SPG11-223ENST00000560858 RSPO2Q6UXX9 243 aaPredicted RBP3.18□□□□□ -1.9
SPG11-223ENST00000560858 HDGFL2Q7Z4V5 671 aaPredicted RBP3.18□□□□□ -1.9
SPG11-223ENST00000560858 NGEFQ8N5V2 710 aa3.18□□□□□ -1.9
SPG11-223ENST00000560858 OR14K1Q8NGZ2 314 aa3.18□□□□□ -1.9
SPG11-223ENST00000560858 KCTD13Q8WZ19 329 aa3.18□□□□□ -1.9
SPG11-223ENST00000560858 LENG9Q96B70 501 aa3.18□□□□□ -1.9
SPG11-223ENST00000560858 POLR3GLQ9BT43 218 aa3.18□□□□□ -1.9
SPG11-223ENST00000560858 USP35Q9P2H5 1018 aa3.18□□□□□ -1.9
SPG11-223ENST00000560858 CDC42EP3Q9UKI2 254 aa3.18□□□□□ -1.9
SPG11-223ENST00000560858 SH3BP1Q9Y3L3 701 aa3.18□□□□□ -1.9
SPG11-223ENST00000560858 TELO2Q9Y4R8 837 aa3.18□□□□□ -1.9
SPG11-223ENST00000560858 MED14O60244 1454 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 COL3A1P02461 1466 aaPredicted RBP3.17□□□□□ -1.9
SPG11-223ENST00000560858 MLH3Q9UHC1 1453 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 POLR3AO14802 1390 aaPredicted RBP3.17□□□□□ -1.9
SPG11-223ENST00000560858 KNDC1Q76NI1 1749 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 A0A1W2PRX2 142 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 GRK2P25098 689 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 PPP2R1AP30153 589 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 GRK3P35626 688 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 ADCY8P40145 1251 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 SCNN1GP51170 649 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 HGFACQ04756 655 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 MAP4K2Q12851 820 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 TOB2Q14106 344 aaPredicted RBP3.17□□□□□ -1.9
SPG11-223ENST00000560858 KIZQ2M2Z5 673 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 LDLRAD1Q5T700 205 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 BTBD8Q5XKL5 378 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 OLFML1Q6UWY5 402 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 MICALCLQ6ZW33 695 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 CENPQQ7L2Z9 268 aaPredicted RBP3.17□□□□□ -1.9
SPG11-223ENST00000560858 TRMT2AQ8IZ69 625 aaKnown RBP3.17□□□□□ -1.9
SPG11-223ENST00000560858 NLGN4XQ8N0W4 816 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 ZNF276Q8N554 614 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 RASGRP4Q8TDF6 673 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 GPRASP2Q96D09 838 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 C1orf159Q96HA4 380 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 BBC3Q96PG8 261 aaPredicted RBP3.17□□□□□ -1.9
SPG11-223ENST00000560858 PHF20Q9BVI0 1012 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 TOR3AQ9H497 397 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 PANK3Q9H999 370 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 INCENPQ9NQS7 918 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 GALNT8Q9NY28 637 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 PPARGC1AQ9UBK2 798 aaKnown RBP3.17□□□□□ -1.9
SPG11-223ENST00000560858 POGZQ7Z3K3 1410 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 CFAP65Q6ZU64 1925 aaKnown RBP3.17□□□□□ -1.9
SPG11-223ENST00000560858 XDHP47989 1333 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 REREQ9P2R6 1566 aa3.17□□□□□ -1.9
SPG11-223ENST00000560858 MON2Q7Z3U7 1717 aa3.16□□□□□ -1.9
SPG11-223ENST00000560858 TMEM131LA2VDJ0 1609 aa3.16□□□□□ -1.9
SPG11-223ENST00000560858 RIMBP3CA6NJZ7 1639 aa3.16□□□□□ -1.9
SPG11-223ENST00000560858 RIMBP3BA6NNM3 1639 aa3.16□□□□□ -1.9
SPG11-223ENST00000560858 KANK1Q14678 1352 aa3.16□□□□□ -1.9
SPG11-223ENST00000560858 RIMBP3Q9UFD9 1639 aa3.16□□□□□ -1.9
SPG11-223ENST00000560858 N4BP2Q86UW6 1770 aaPredicted RBP3.16□□□□□ -1.9
SPG11-223ENST00000560858 A0A0G2JNJ9 132 aa3.16□□□□□ -1.9
SPG11-223ENST00000560858 PPM1GO15355 546 aaPredicted RBP3.16□□□□□ -1.9
SPG11-223ENST00000560858 B3GALT2O43825 422 aa3.16□□□□□ -1.9
SPG11-223ENST00000560858 MSCO60682 206 aa3.16□□□□□ -1.9
SPG11-223ENST00000560858 ABHD16AO95870 558 aa3.16□□□□□ -1.9
SPG11-223ENST00000560858 CTGFP29279 349 aa3.16□□□□□ -1.9
SPG11-223ENST00000560858 NASPP49321 788 aaPredicted RBP3.16□□□□□ -1.9
SPG11-223ENST00000560858 IL13RA1P78552 427 aa3.16□□□□□ -1.9
SPG11-223ENST00000560858 SMAD3P84022 425 aaKnown RBP3.16□□□□□ -1.9
SPG11-223ENST00000560858 RIN1Q13671 783 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms