RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 LDLRAD1Q5T700 205 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 KCNV1Q6PIU1 500 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 PASD1Q8IV76 773 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 SMAP1Q8IYB5 467 aaPredicted RBP5.93□□□□□ -1.46
VPS13C-209ENST00000560637 FBXL16Q8N461 479 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 SOCS4Q8WXH5 440 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 HINFPQ9BQA5 517 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 CBWD1Q9BRT8 395 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 NACA2Q9H009 215 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 UBE2TQ9NPD8 197 aaPredicted RBP5.93□□□□□ -1.46
VPS13C-209ENST00000560637 DNAI1Q9UI46 699 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 KIF3CO14782 793 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 NEBLO76041 1014 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 INHAP05111 366 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 PNMA6AP0CW24 399 aaPredicted RBP5.93□□□□□ -1.46
VPS13C-209ENST00000560637 AKAP5P24588 427 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 FXR2P51116 673 aaKnown RBP eCLIP5.93□□□□□ -1.462e-7■■□□□ 13.4
VPS13C-209ENST00000560637 GRIK4Q16099 956 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 ZNF746Q6NUN9 644 aaPredicted RBP5.93□□□□□ -1.46
VPS13C-209ENST00000560637 FAM133AQ8N9E0 248 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 XXYLT1Q8NBI6 393 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 U2AF1L4Q8WU68 220 aaKnown RBP5.93□□□□□ -1.46
VPS13C-209ENST00000560637 TCP11Q8WWU5 503 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 TAF4BQ92750 862 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 KIFAP3Q92845 792 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 KIF12Q96FN5 646 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 TIGD1Q96MW7 591 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 PPP1R9BQ96SB3 815 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 APBA2Q99767 749 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 BAG1Q99933 345 aaPredicted RBP5.93□□□□□ -1.46
VPS13C-209ENST00000560637 KDM4CQ9H3R0 1056 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 RNPEPQ9H4A4 650 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 PDE11AQ9HCR9 933 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 TUFT1Q9NNX1 390 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 RBAKQ9NYW8 714 aaPredicted RBP5.93□□□□□ -1.46
VPS13C-209ENST00000560637 HDAC6Q9UBN7 1215 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 ZNF112Q9UJU3 913 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 AGO2Q9UKV8 859 aaKnown RBP5.93□□□□□ -1.46
VPS13C-209ENST00000560637 UBR2Q8IWV8 1755 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 ADAMTS7Q9UKP4 1686 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 PCNTO95613 3336 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 SLC15A5A6NIM6 579 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 TBX3O15119 743 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 NPTXRO95502 500 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 RAG1P15918 1043 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 CD44P16070 742 aaKnown RBP5.92□□□□□ -1.46
VPS13C-209ENST00000560637 CTNNA2P26232 953 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 NPTX2P47972 431 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 LACTBP83111 547 aaPredicted RBP5.92□□□□□ -1.46
VPS13C-209ENST00000560637 SP2Q02086 613 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 CYP27A1Q02318 531 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 BFSP1Q12934 665 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 SKIV2LQ15477 1246 aaKnown RBP5.92□□□□□ -1.46
VPS13C-209ENST00000560637 NOL9Q5SY16 702 aaKnown RBP5.92□□□□□ -1.46
VPS13C-209ENST00000560637 DSTYKQ6XUX3 929 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 GBP6Q6ZN66 633 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 APBB1IPQ7Z5R6 666 aaPredicted RBP5.92□□□□□ -1.46
VPS13C-209ENST00000560637 MICALL1Q8N3F8 863 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.92□□□□□ -1.46
VPS13C-209ENST00000560637 REPS2Q8NFH8 660 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 OR6B3Q8NGW1 331 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 FAM149B1Q96BN6 582 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 WDR70Q9NW82 654 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 RNF186Q9NXI6 227 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 PCDHB4Q9Y5E5 795 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 PTCH2Q9Y6C5 1203 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.92□□□□□ -1.46
VPS13C-209ENST00000560637 GOLGA8SH3BPF8 625 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 TLR3O15455 904 aaKnown RBP5.92□□□□□ -1.46
VPS13C-209ENST00000560637 MAFGO15525 162 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 KIF5CO60282 957 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 STX10O60499 249 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 ACTN1P12814 892 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 SMPD1P17405 629 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 HOXA7P31268 230 aaPredicted RBP5.92□□□□□ -1.46
VPS13C-209ENST00000560637 CYLC1P35663 651 aaPredicted RBP5.92□□□□□ -1.46
VPS13C-209ENST00000560637 DPYDQ12882 1025 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 DRP2Q13474 957 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 MFSD10Q14728 455 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 ASIC2Q16515 512 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 SPECC1LQ69YQ0 1117 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 CCDC50Q8IVM0 306 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 TRIML1Q8N9V2 468 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 RNF34Q969K3 372 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 SENP7Q9BQF6 1050 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 NDST4Q9H3R1 872 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 TMEM206Q9H813 350 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 TOPORSQ9NS56 1045 aaPredicted RBP5.92□□□□□ -1.46
VPS13C-209ENST00000560637 DDX41Q9UJV9 622 aaKnown RBP5.92□□□□□ -1.46
VPS13C-209ENST00000560637 CEP83Q9Y592 693 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 SIPA1L3O60292 1781 aaPredicted RBP5.92□□□□□ -1.46
VPS13C-209ENST00000560637 ARFGEF1Q9Y6D6 1849 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 OPLAHO14841 1288 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 BUB1O43683 1085 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 PSMD10O75832 226 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 ASGR1P07306 291 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 SYN1P17600 705 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 CCND3P30281 292 aaPredicted RBP5.92□□□□□ -1.46
VPS13C-209ENST00000560637 CASP5P51878 434 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 GSDMDP57764 484 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms