RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ZNF410Q86VK4 478 aa24.12■■□□□ 1.45
SNX1-210ENST00000560260 FAM228AQ86W67 206 aa24.12■■□□□ 1.45
SNX1-210ENST00000560260 GRAMD1CQ8IYS0 662 aa24.12■■□□□ 1.45
SNX1-210ENST00000560260 KIFAP3Q92845 792 aa24.12■■□□□ 1.45
SNX1-210ENST00000560260 DNAJC19Q96DA6 116 aa24.12■■□□□ 1.45
SNX1-210ENST00000560260 SCLT1Q96NL6 688 aa24.12■■□□□ 1.45
SNX1-210ENST00000560260 TIPINQ9BVW5 301 aa24.12■■□□□ 1.45
SNX1-210ENST00000560260 MINDY3Q9H8M7 445 aa24.12■■□□□ 1.45
SNX1-210ENST00000560260 ADGRA3Q8IWK6 1321 aa24.12■■□□□ 1.45
SNX1-210ENST00000560260 GOLGA6L4A6NEF3 574 aa24.11■■□□□ 1.45
SNX1-210ENST00000560260 ASAP2O43150 1006 aa24.11■■□□□ 1.45
SNX1-210ENST00000560260 PARNO95453 639 aaKnown RBP24.11■■□□□ 1.45
SNX1-210ENST00000560260 DARSP14868 501 aaKnown RBP24.11■■□□□ 1.45
SNX1-210ENST00000560260 LIG1P18858 919 aa24.11■■□□□ 1.45
SNX1-210ENST00000560260 FGFR4P22455 802 aa24.11■■□□□ 1.45
SNX1-210ENST00000560260 CASP1P29466 404 aa24.11■■□□□ 1.45
SNX1-210ENST00000560260 CD52P31358 61 aa24.11■■□□□ 1.45
SNX1-210ENST00000560260 MXD4Q14582 209 aaPredicted RBP24.11■■□□□ 1.45
SNX1-210ENST00000560260 PLEKHG4Q58EX7 1191 aa24.11■■□□□ 1.45
SNX1-210ENST00000560260 TSHZ1Q6ZSZ6 1077 aa24.11■■□□□ 1.45
SNX1-210ENST00000560260 DYMQ7RTS9 669 aa24.11■■□□□ 1.45
SNX1-210ENST00000560260 FMR1NBQ8N0W7 255 aaPredicted RBP24.11■■□□□ 1.45
SNX1-210ENST00000560260 ENGASEQ8NFI3 743 aa24.11■■□□□ 1.45
SNX1-210ENST00000560260 DDX12PQ92771 950 aa24.11■■□□□ 1.45
SNX1-210ENST00000560260 KIFC3Q9BVG8 833 aa24.11■■□□□ 1.45
SNX1-210ENST00000560260 TNMDQ9H2S6 317 aa24.11■■□□□ 1.45
SNX1-210ENST00000560260 SLFN14P0C7P3 912 aa24.1■■□□□ 1.45
SNX1-210ENST00000560260 EIF4BP23588 611 aaKnown RBP24.1■■□□□ 1.45
SNX1-210ENST00000560260 SNW1Q13573 536 aaKnown RBP24.1■■□□□ 1.45
SNX1-210ENST00000560260 DBF4BQ8NFT6 615 aa24.1■■□□□ 1.45
SNX1-210ENST00000560260 DRC1Q96MC2 740 aa24.1■■□□□ 1.45
SNX1-210ENST00000560260 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.1■■□□□ 1.453e-7■■□□□ 11.6
SNX1-210ENST00000560260 ERVK-5Q9HDB9 667 aa24.1■■□□□ 1.45
SNX1-210ENST00000560260 SQORQ9Y6N5 450 aa24.1■■□□□ 1.45
SNX1-210ENST00000560260 MYH11P35749 1972 aa24.1■■□□□ 1.45
SNX1-210ENST00000560260 RANBP2P49792 3224 aaKnown RBP24.1■■□□□ 1.45
SNX1-210ENST00000560260 LRRIQ4A6NIV6 560 aa24.1■■□□□ 1.45
SNX1-210ENST00000560260 PRPF40AO75400 957 aaKnown RBP24.1■■□□□ 1.45
SNX1-210ENST00000560260 KRT18P05783 430 aaKnown RBP24.1■■□□□ 1.45
SNX1-210ENST00000560260 ZNF131P52739 623 aa24.1■■□□□ 1.45
SNX1-210ENST00000560260 PTENP60484 403 aa24.1■■□□□ 1.45
SNX1-210ENST00000560260 TMEM240Q5SV17 173 aa24.1■■□□□ 1.45
SNX1-210ENST00000560260 CDCA2Q69YH5 1023 aaPredicted RBP24.1■■□□□ 1.45
SNX1-210ENST00000560260 IFNLR1Q8IU57 520 aaPredicted RBP24.1■■□□□ 1.45
SNX1-210ENST00000560260 ZNF710Q8N1W2 664 aa24.1■■□□□ 1.45
SNX1-210ENST00000560260 PYM1Q9BRP8 204 aaKnown RBP24.1■■□□□ 1.45
SNX1-210ENST00000560260 GCOM2Q9BZD3 368 aaPredicted RBP24.1■■□□□ 1.45
SNX1-210ENST00000560260 TRIM9Q9C026 710 aa24.1■■□□□ 1.45
SNX1-210ENST00000560260 PRO3102Q9H379 93 aa24.1■■□□□ 1.45
SNX1-210ENST00000560260 MAGEF1Q9HAY2 307 aa24.1■■□□□ 1.45
SNX1-210ENST00000560260 ODF2LQ9ULJ1 636 aa24.1■■□□□ 1.45
SNX1-210ENST00000560260 PADI3Q9ULW8 664 aa24.1■■□□□ 1.45
SNX1-210ENST00000560260 RPS6KA5O75582 802 aa24.09■■□□□ 1.45
SNX1-210ENST00000560260 ZNF202O95125 648 aa24.09■■□□□ 1.45
SNX1-210ENST00000560260 NAMPTP43490 491 aa24.09■■□□□ 1.45
SNX1-210ENST00000560260 NPTX2P47972 431 aa24.09■■□□□ 1.45
SNX1-210ENST00000560260 PEX3P56589 373 aa24.09■■□□□ 1.45
SNX1-210ENST00000560260 CDC42EP1Q00587 391 aa24.09■■□□□ 1.45
SNX1-210ENST00000560260 TFDP1Q14186 410 aa24.09■■□□□ 1.45
SNX1-210ENST00000560260 C9orf50Q5SZB4 431 aa24.09■■□□□ 1.45
SNX1-210ENST00000560260 KRBA2Q6ZNG9 492 aa24.09■■□□□ 1.45
SNX1-210ENST00000560260 ZNF365Q70YC5 407 aa24.09■■□□□ 1.45
SNX1-210ENST00000560260 LINC01599Q8WXQ3 324 aa24.09■■□□□ 1.45
SNX1-210ENST00000560260 PAGE5Q96GU1 130 aa24.09■■□□□ 1.45
SNX1-210ENST00000560260 IFIH1Q9BYX4 1025 aaKnown RBP24.09■■□□□ 1.45
SNX1-210ENST00000560260 TMX1Q9H3N1 280 aa24.09■■□□□ 1.45
SNX1-210ENST00000560260 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP24.08■■□□□ 1.44
SNX1-210ENST00000560260 PFKMP08237 780 aa24.08■■□□□ 1.44
SNX1-210ENST00000560260 PLS3P13797 630 aa24.08■■□□□ 1.44
SNX1-210ENST00000560260 AFMP43652 599 aa24.08■■□□□ 1.44
SNX1-210ENST00000560260 PHKA2P46019 1235 aa24.08■■□□□ 1.44
SNX1-210ENST00000560260 UBE2HP62256 183 aa24.08■■□□□ 1.44
SNX1-210ENST00000560260 MBTD1Q05BQ5 628 aa24.08■■□□□ 1.44
SNX1-210ENST00000560260 FAM160A1Q05DH4 1040 aa24.08■■□□□ 1.44
SNX1-210ENST00000560260 PAK2Q13177 524 aa24.08■■□□□ 1.44
SNX1-210ENST00000560260 CNKSR3Q6P9H4 555 aa24.08■■□□□ 1.44
SNX1-210ENST00000560260 CEP57L1Q8IYX8 460 aa24.08■■□□□ 1.44
SNX1-210ENST00000560260 RPUSD2Q8IZ73 545 aaKnown RBP24.08■■□□□ 1.44
SNX1-210ENST00000560260 USP38Q8NB14 1042 aa24.08■■□□□ 1.44
SNX1-210ENST00000560260 GBP4Q96PP9 640 aa24.08■■□□□ 1.44
SNX1-210ENST00000560260 BLZF1Q9H2G9 400 aa24.08■■□□□ 1.44
SNX1-210ENST00000560260 LMBRD1Q9NUN5 540 aa24.08■■□□□ 1.44
SNX1-210ENST00000560260 USP25Q9UHP3 1055 aa24.08■■□□□ 1.44
SNX1-210ENST00000560260 MICAL3Q7RTP6 2002 aa24.07■■□□□ 1.44
SNX1-210ENST00000560260 FRMD3A2A2Y4 597 aa24.07■■□□□ 1.44
SNX1-210ENST00000560260 NR1I2O75469 434 aa24.07■■□□□ 1.44
SNX1-210ENST00000560260 FAM13AO94988 1023 aa24.07■■□□□ 1.44
SNX1-210ENST00000560260 EDN1P05305 212 aa24.07■■□□□ 1.44
SNX1-210ENST00000560260 PRR29P0C7W0 189 aa24.07■■□□□ 1.44
SNX1-210ENST00000560260 POU5F1BQ06416 359 aa24.07■■□□□ 1.44
SNX1-210ENST00000560260 CUL4BQ13620 913 aa24.07■■□□□ 1.44
SNX1-210ENST00000560260 CHRDL2Q6WN34 429 aa24.07■■□□□ 1.44
SNX1-210ENST00000560260 SRGAP1Q7Z6B7 1085 aa24.07■■□□□ 1.44
SNX1-210ENST00000560260 SEPT8Q92599 483 aa24.07■■□□□ 1.44
SNX1-210ENST00000560260 IFT74Q96LB3 600 aa24.07■■□□□ 1.44
SNX1-210ENST00000560260 FIZ1Q96SL8 496 aa24.07■■□□□ 1.44
SNX1-210ENST00000560260 NFKBIZQ9BYH8 718 aa24.07■■□□□ 1.44
SNX1-210ENST00000560260 ST3GAL5Q9UNP4 418 aa24.07■■□□□ 1.44
SNX1-210ENST00000560260 MGEA5O60502 916 aa24.06■■□□□ 1.44
SNX1-210ENST00000560260 TBCAO75347 108 aaKnown RBP24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms