RNA–Protein interactions for RNA: ENST00000560243.5

RABGGTA-216, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 5

Gene RABGGTA, Length 704 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-216ENST00000560243 ECM1Q16610 540 aa12.99□□□□□ -0.33
RABGGTA-216ENST00000560243 RNF169Q8NCN4 708 aa12.99□□□□□ -0.33
RABGGTA-216ENST00000560243 PSPC1Q8WXF1 523 aaKnown RBP12.99□□□□□ -0.33
RABGGTA-216ENST00000560243 TUFT1Q9NNX1 390 aa12.99□□□□□ -0.33
RABGGTA-216ENST00000560243 NCOR1O75376 2440 aa12.99□□□□□ -0.33
RABGGTA-216ENST00000560243 BDP1A6H8Y1 2624 aa12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 TBKBP1A7MCY6 615 aa12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 PP2D1A8MPX8 630 aa12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 C5orf67F2Z3F1 127 aa12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 ZSCAN20P17040 1043 aaPredicted RBP12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 ATF7P17544 494 aaPredicted RBP12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 FXR2P51116 673 aaKnown RBP eCLIP12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 CDC42EP1Q00587 391 aa12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 LARP1BQ659C4 914 aaKnown RBP12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 FERMT3Q86UX7 667 aa12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 ECHDC2Q86YB7 292 aa12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 ASAP3Q8TDY4 903 aa12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 MTRQ99707 1265 aa12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 POLR3CQ9BUI4 534 aaPredicted RBP12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 ATP6V0A4Q9HBG4 840 aa12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 GPRC5CQ9NQ84 441 aa12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 TMEM161AQ9NX61 479 aa12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 LMCD1Q9NZU5 365 aa12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 THEGQ9P2T0 379 aa12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.98□□□□□ -0.33
RABGGTA-216ENST00000560243 A0A0U1RQF3 1178 aa12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 DLL1O00548 723 aa12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 USO1O60763 962 aaKnown RBP12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 CSPG5O95196 566 aa12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 SFPQP23246 707 aaKnown RBP eCLIP12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 DNAJB1P25685 340 aa12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 RPA1P27694 616 aa12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 CDC25AP30304 524 aa12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 LONRF3Q496Y0 759 aa12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 CLLU1OSQ5K130 101 aa12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 LRRC55Q6ZSA7 311 aa12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 FAM43BQ6ZT52 329 aaPredicted RBP12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 MAEAQ7L5Y9 396 aa12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 CATSPER4Q7RTX7 472 aa12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 ZNF598Q86UK7 904 aaKnown RBP12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 EXOC8Q8IYI6 725 aa12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 RNF149Q8NC42 400 aa12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 TCP11Q8WWU5 503 aa12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 MRPL38Q96DV4 380 aaKnown RBP12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 COL25A1Q9BXS0 654 aaPredicted RBP12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 ELAC1Q9H777 363 aaKnown RBP12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 ALG13Q9NP73 1137 aaKnown RBP12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 TYW1Q9NV66 732 aaKnown RBP12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 LRWD1Q9UFC0 647 aa12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 PIN4Q9Y237 131 aaKnown RBP12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 PLXNA4Q9HCM2 1894 aa12.97□□□□□ -0.33
RABGGTA-216ENST00000560243 MEIS3P2A8K0S8 358 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 GAS2O43903 313 aaKnown RBP12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 DGAT1O75907 488 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 ITGB1P05556 798 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 RB1P06400 928 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 XRCC6P12956 609 aaKnown RBP eCLIP12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 GLRA2P23416 452 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 HOXA11P31270 313 aaPredicted RBP12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 ARL2P36404 184 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 CCT6AP40227 531 aaKnown RBP12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 CAPSQ13938 189 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 CAMK1Q14012 370 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 RILPL1Q5EBL4 403 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 TWF2Q6IBS0 349 aaKnown RBP12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 IGSF22Q8N9C0 903 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 KLHL23Q8NBE8 558 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 ERMNQ8TAM6 284 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 LPPQ93052 612 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 CCDC43Q96MW1 224 aaKnown RBP12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 CASD1Q96PB1 797 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 NACC1Q96RE7 527 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 C11orf84Q9BUA3 381 aaPredicted RBP12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 INO80BQ9C086 356 aaPredicted RBP12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 POLR3FQ9H1D9 316 aaPredicted RBP12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 CWH43Q9H720 699 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 POLD4Q9HCU8 107 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 CHST12Q9NRB3 414 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 AGPAT5Q9NUQ2 364 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 DBR1Q9UK59 544 aaKnown RBP12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 PLAGL2Q9UPG8 496 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 RWDD3Q9Y3V2 267 aa12.96□□□□□ -0.33
RABGGTA-216ENST00000560243 TCF20Q9UGU0 1960 aaKnown RBP12.96□□□□□ -0.34
RABGGTA-216ENST00000560243 ASAP2O43150 1006 aa12.95□□□□□ -0.34
RABGGTA-216ENST00000560243 PHKA2P46019 1235 aa12.95□□□□□ -0.34
RABGGTA-216ENST00000560243 PTENP60484 403 aa12.95□□□□□ -0.34
RABGGTA-216ENST00000560243 ATP2C1P98194 919 aaPredicted RBP12.95□□□□□ -0.34
RABGGTA-216ENST00000560243 PDIA5Q14554 519 aa12.95□□□□□ -0.34
RABGGTA-216ENST00000560243 MXD4Q14582 209 aaPredicted RBP12.95□□□□□ -0.34
RABGGTA-216ENST00000560243 PTPROQ16827 1216 aa12.95□□□□□ -0.34
RABGGTA-216ENST00000560243 TCEAL5Q5H9L2 206 aa12.95□□□□□ -0.34
RABGGTA-216ENST00000560243 SRGAP1Q7Z6B7 1085 aa12.95□□□□□ -0.34
RABGGTA-216ENST00000560243 HELQQ8TDG4 1101 aa12.95□□□□□ -0.34
RABGGTA-216ENST00000560243 ATXN2LQ8WWM7 1075 aaKnown RBP12.95□□□□□ -0.34
RABGGTA-216ENST00000560243 ASB2Q96Q27 587 aa12.95□□□□□ -0.34
RABGGTA-216ENST00000560243 MMTAG2Q9BU76 263 aaKnown RBP12.95□□□□□ -0.34
RABGGTA-216ENST00000560243 PLVAPQ9BX97 442 aa12.95□□□□□ -0.34
RABGGTA-216ENST00000560243 TMEM117Q9H0C3 514 aa12.95□□□□□ -0.34
RABGGTA-216ENST00000560243 FOXD4L1Q9NU39 408 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms