RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 SIP14410 1827 aa13.43□□□□□ -0.26
HERC1-205ENST00000559886 SLC16A4O15374 487 aa13.42□□□□□ -0.26
HERC1-205ENST00000559886 NAMPTP43490 491 aa13.42□□□□□ -0.26
HERC1-205ENST00000559886 KCNA1Q09470 495 aa13.42□□□□□ -0.26
HERC1-205ENST00000559886 TPD52L1Q16890 204 aaPredicted RBP13.42□□□□□ -0.26
HERC1-205ENST00000559886 LHX8Q68G74 356 aa13.42□□□□□ -0.26
HERC1-205ENST00000559886 MTHFD1LQ6UB35 978 aa13.42□□□□□ -0.26
HERC1-205ENST00000559886 LINC01465Q8N7H1 131 aa13.42□□□□□ -0.26
HERC1-205ENST00000559886 SH3TC2Q8TF17 1288 aa13.42□□□□□ -0.26
HERC1-205ENST00000559886 PRPF31Q8WWY3 499 aaKnown RBP13.42□□□□□ -0.26
HERC1-205ENST00000559886 PSPC1Q8WXF1 523 aaKnown RBP13.42□□□□□ -0.26
HERC1-205ENST00000559886 KCNN1Q92952 543 aa13.42□□□□□ -0.26
HERC1-205ENST00000559886 SAMSN1Q9NSI8 373 aaKnown RBP13.42□□□□□ -0.26
HERC1-205ENST00000559886 DNM2P50570 870 aa13.42□□□□□ -0.26
HERC1-205ENST00000559886 MXD4Q14582 209 aaPredicted RBP13.42□□□□□ -0.26
HERC1-205ENST00000559886 CDKAL1Q5VV42 579 aa13.42□□□□□ -0.26
HERC1-205ENST00000559886 LMBR1Q8WVP7 490 aa13.42□□□□□ -0.26
HERC1-205ENST00000559886 HVCN1Q96D96 273 aa13.42□□□□□ -0.26
HERC1-205ENST00000559886 ZBTB10Q96DT7 871 aa13.42□□□□□ -0.26
HERC1-205ENST00000559886 TSG101Q99816 390 aa13.42□□□□□ -0.26
HERC1-205ENST00000559886 SETD4Q9NVD3 440 aa13.42□□□□□ -0.26
HERC1-205ENST00000559886 ARHGAP28Q9P2N2 729 aa13.42□□□□□ -0.26
HERC1-205ENST00000559886 ADGRA3Q8IWK6 1321 aa13.42□□□□□ -0.26
HERC1-205ENST00000559886 ZMYM2Q9UBW7 1377 aa13.42□□□□□ -0.26
HERC1-205ENST00000559886 PDXKO00764 312 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 AP5Z1O43299 807 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 HSPA8P11142 646 aaKnown RBP13.41□□□□□ -0.26
HERC1-205ENST00000559886 SCP2P22307 547 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 SARM1Q6SZW1 724 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 CXCL17Q6UXB2 119 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 PPP4R3CPQ6ZMV5 832 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 KSR1Q8IVT5 923 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 CSGALNACT2Q8N6G5 542 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 METTL13Q8N6R0 699 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 PCSK9Q8NBP7 692 aaKnown RBP13.41□□□□□ -0.26
HERC1-205ENST00000559886 KIFC3Q9BVG8 833 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 SUCLA2Q9P2R7 463 aaPredicted RBP13.41□□□□□ -0.26
HERC1-205ENST00000559886 TRAF3IP3Q9Y228 551 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 BRCA2P51587 3418 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 H0YCG3 227 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 ASGR1P07306 291 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 ATP1A3P13637 1013 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 HOXC8P31273 242 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 ABCD1P33897 745 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 CLCN3P51790 818 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 CHMP4BP1P59074 171 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 ADAM17P78536 824 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 CAPSQ13938 189 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 KCNA10Q16322 511 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 EDRF1Q3B7T1 1238 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 RNF180Q86T96 592 aa13.41□□□□□ -0.26
HERC1-205ENST00000559886 NOC3LQ8WTT2 800 aaKnown RBP13.41□□□□□ -0.26
HERC1-205ENST00000559886 SRRTQ9BXP5 876 aaKnown RBP13.41□□□□□ -0.26
HERC1-205ENST00000559886 TYW1Q9NV66 732 aaKnown RBP13.41□□□□□ -0.26
HERC1-205ENST00000559886 DENND3A2RUS2 1198 aa13.4□□□□□ -0.26
HERC1-205ENST00000559886 MBLAC1A4D2B0 266 aaPredicted RBP13.4□□□□□ -0.26
HERC1-205ENST00000559886 ASAP2O43150 1006 aa13.4□□□□□ -0.26
HERC1-205ENST00000559886 TGFB1I1O43294 461 aa13.4□□□□□ -0.26
HERC1-205ENST00000559886 TMOD1P28289 359 aa13.4□□□□□ -0.26
HERC1-205ENST00000559886 LAMTOR4Q0VGL1 99 aa13.4□□□□□ -0.26
HERC1-205ENST00000559886 IRF2BP1Q8IU81 584 aa13.4□□□□□ -0.26
HERC1-205ENST00000559886 ACCSQ96QU6 501 aa13.4□□□□□ -0.26
HERC1-205ENST00000559886 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.4□□□□□ -0.262e-6■■□□□ 13.3
HERC1-205ENST00000559886 THAP9Q9H5L6 903 aa13.4□□□□□ -0.26
HERC1-205ENST00000559886 TMEM206Q9H813 350 aa13.4□□□□□ -0.26
HERC1-205ENST00000559886 TBX20Q9UMR3 447 aa13.4□□□□□ -0.26
HERC1-205ENST00000559886 LRRIQ4A6NIV6 560 aa13.4□□□□□ -0.26
HERC1-205ENST00000559886 FKBP3Q00688 224 aaKnown RBP13.4□□□□□ -0.26
HERC1-205ENST00000559886 PLCB2Q00722 1185 aa13.4□□□□□ -0.26
HERC1-205ENST00000559886 HIC1Q14526 733 aa13.4□□□□□ -0.26
HERC1-205ENST00000559886 SLC9C1Q4G0N8 1177 aa13.4□□□□□ -0.26
HERC1-205ENST00000559886 HSP90AA4PQ58FG1 418 aa13.4□□□□□ -0.26
HERC1-205ENST00000559886 NFRKBQ6P4R8 1299 aa13.4□□□□□ -0.26
HERC1-205ENST00000559886 ZC3H3Q8IXZ2 948 aaKnown RBP13.4□□□□□ -0.26
HERC1-205ENST00000559886 GBP3Q9H0R5 595 aa13.4□□□□□ -0.26
HERC1-205ENST00000559886 HDAC6Q9UBN7 1215 aa13.4□□□□□ -0.26
HERC1-205ENST00000559886 CALUO43852 315 aaPredicted RBP13.39□□□□□ -0.27
HERC1-205ENST00000559886 LRRC55Q6ZSA7 311 aa13.39□□□□□ -0.27
HERC1-205ENST00000559886 RHPN2Q8IUC4 686 aa13.39□□□□□ -0.27
HERC1-205ENST00000559886 MAP4K3Q8IVH8 894 aa13.39□□□□□ -0.27
HERC1-205ENST00000559886 C7orf31Q8N865 590 aa13.39□□□□□ -0.27
HERC1-205ENST00000559886 DEPTORQ8TB45 409 aa13.39□□□□□ -0.27
HERC1-205ENST00000559886 PPP1R13LQ8WUF5 828 aa13.39□□□□□ -0.27
HERC1-205ENST00000559886 FGFR1OPO95684 399 aaKnown RBP13.39□□□□□ -0.27
HERC1-205ENST00000559886 MYCNP04198 464 aaPredicted RBP13.39□□□□□ -0.27
HERC1-205ENST00000559886 GJB1P08034 283 aa13.39□□□□□ -0.27
HERC1-205ENST00000559886 GNAT1P11488 350 aa13.39□□□□□ -0.27
HERC1-205ENST00000559886 CDK11BP21127 795 aaKnown RBP13.39□□□□□ -0.27
HERC1-205ENST00000559886 NFIL3Q16649 462 aa13.39□□□□□ -0.27
HERC1-205ENST00000559886 NBPF20Q3BBV1 942 aa13.39□□□□□ -0.27
HERC1-205ENST00000559886 CDCA2Q69YH5 1023 aaPredicted RBP13.39□□□□□ -0.27
HERC1-205ENST00000559886 TAS1R3Q7RTX0 852 aa13.39□□□□□ -0.27
HERC1-205ENST00000559886 CTU1Q7Z7A3 348 aaKnown RBP13.39□□□□□ -0.27
HERC1-205ENST00000559886 KIAA0319LQ8IZA0 1049 aa13.39□□□□□ -0.27
HERC1-205ENST00000559886 SYCP3Q8IZU3 236 aa13.39□□□□□ -0.27
HERC1-205ENST00000559886 EEF2KMTQ96G04 330 aa13.39□□□□□ -0.27
HERC1-205ENST00000559886 TSEN34Q9BSV6 310 aaKnown RBP13.39□□□□□ -0.27
HERC1-205ENST00000559886 UNC93B1Q9H1C4 597 aa13.39□□□□□ -0.27
HERC1-205ENST00000559886 IKZF4Q9H2S9 585 aa13.39□□□□□ -0.27
HERC1-205ENST00000559886 PAK6Q9NQU5 681 aaPredicted RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms