RNA–Protein interactions for RNA: ENST00000559822.1

SPG11-219, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 561 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-219ENST00000559822 RNF169Q8NCN4 708 aa13.75□□□□□ -0.21
SPG11-219ENST00000559822 MRPS27Q92552 414 aaKnown RBP13.75□□□□□ -0.21
SPG11-219ENST00000559822 KHSRPQ92945 711 aaKnown RBP eCLIP13.75□□□□□ -0.21
SPG11-219ENST00000559822 ZNF668Q96K58 619 aaPredicted RBP13.75□□□□□ -0.21
SPG11-219ENST00000559822 CASD1Q96PB1 797 aa13.75□□□□□ -0.21
SPG11-219ENST00000559822 CWH43Q9H720 699 aa13.75□□□□□ -0.21
SPG11-219ENST00000559822 NGRNQ9NPE2 291 aaKnown RBP13.75□□□□□ -0.21
SPG11-219ENST00000559822 CYP26B1Q9NR63 512 aa13.75□□□□□ -0.21
SPG11-219ENST00000559822 SUCLA2Q9P2R7 463 aaPredicted RBP13.75□□□□□ -0.21
SPG11-219ENST00000559822 VAV3Q9UKW4 847 aa13.75□□□□□ -0.21
SPG11-219ENST00000559822 ARIH1Q9Y4X5 557 aaPredicted RBP13.75□□□□□ -0.21
SPG11-219ENST00000559822 PRR33A8MZF0 331 aa13.74□□□□□ -0.21
SPG11-219ENST00000559822 GAS2O43903 313 aaKnown RBP13.74□□□□□ -0.21
SPG11-219ENST00000559822 STBD1O95210 358 aa13.74□□□□□ -0.21
SPG11-219ENST00000559822 KRT2P35908 639 aa13.74□□□□□ -0.21
SPG11-219ENST00000559822 RAB27AP51159 221 aa13.74□□□□□ -0.21
SPG11-219ENST00000559822 AK2P54819 239 aa13.74□□□□□ -0.21
SPG11-219ENST00000559822 DRP2Q13474 957 aa13.74□□□□□ -0.21
SPG11-219ENST00000559822 BMS1Q14692 1282 aaKnown RBP13.74□□□□□ -0.21
SPG11-219ENST00000559822 TWF2Q6IBS0 349 aaKnown RBP13.74□□□□□ -0.21
SPG11-219ENST00000559822 KCNT2Q6UVM3 1135 aa13.74□□□□□ -0.21
SPG11-219ENST00000559822 ANO5Q75V66 913 aa13.74□□□□□ -0.21
SPG11-219ENST00000559822 OTUD6AQ7L8S5 288 aa13.74□□□□□ -0.21
SPG11-219ENST00000559822 RBM23Q86U06 439 aaKnown RBP13.74□□□□□ -0.21
SPG11-219ENST00000559822 MSLNLQ96KJ4 702 aa13.74□□□□□ -0.21
SPG11-219ENST00000559822 CEP89Q96ST8 783 aa13.74□□□□□ -0.21
SPG11-219ENST00000559822 TRAIPQ9BWF2 469 aa13.74□□□□□ -0.21
SPG11-219ENST00000559822 ENTPD7Q9NQZ7 604 aa13.74□□□□□ -0.21
SPG11-219ENST00000559822 SPG21Q9NZD8 308 aa13.74□□□□□ -0.21
SPG11-219ENST00000559822 A0A087WZ62 844 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 TMEM150BA6NC51 233 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 EML1O00423 815 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 FSCN2O14926 492 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 FGFR4P22455 802 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 RFC5P40937 340 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 PHKA2P46019 1235 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 POLGP54098 1239 aaPredicted RBP13.73□□□□□ -0.21
SPG11-219ENST00000559822 EPHA7Q15375 998 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 DUSP6Q16828 381 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 CATSPER4Q7RTX7 472 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 ZNF598Q86UK7 904 aaKnown RBP13.73□□□□□ -0.21
SPG11-219ENST00000559822 C4orf19Q8IY42 314 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 SMRP1Q8NCR6 262 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 PSPC1Q8WXF1 523 aaKnown RBP13.73□□□□□ -0.21
SPG11-219ENST00000559822 GTF3C6Q969F1 213 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 FAM122AQ96E09 287 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 CEP170P1Q96L14 293 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 NLRP4Q96MN2 994 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 TCF25Q9BQ70 676 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 SH2D3AQ9BRG2 576 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 FDXACB1Q9BRP7 624 aaPredicted RBP13.73□□□□□ -0.21
SPG11-219ENST00000559822 RNF19AQ9NV58 838 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 CLEC1BQ9P126 229 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 HCSTQ9UBK5 93 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 PIN4Q9Y237 131 aaKnown RBP13.73□□□□□ -0.21
SPG11-219ENST00000559822 COL4A3BPQ9Y5P4 624 aa13.73□□□□□ -0.21
SPG11-219ENST00000559822 FAM86C2PA6NEL3 165 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 CTDNEP1O95476 244 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 PLA2G5P39877 138 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 ALDH7A1P49419 539 aaKnown RBP13.72□□□□□ -0.21
SPG11-219ENST00000559822 ERVFC1P60507 584 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 TRIM29Q14134 588 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 CLLU1OSQ5K130 101 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 PLPP4Q5VZY2 271 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 PLA2G4FQ68DD2 849 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 GLB1LQ6UWU2 654 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 LRRC55Q6ZSA7 311 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 POTEDQ86YR6 584 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 HELQQ8TDG4 1101 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 OXER1Q8TDS5 423 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 TCP11Q8WWU5 503 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 PGBD4Q96DM1 585 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 LXNQ9BS40 222 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 ZSWIM4Q9H7M6 989 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 C11orf16Q9NQ32 467 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 RAPGEFL1Q9UHV5 662 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 BARX2Q9UMQ3 279 aaPredicted RBP13.72□□□□□ -0.21
SPG11-219ENST00000559822 PCDHGC5Q9Y5F6 944 aa13.72□□□□□ -0.21
SPG11-219ENST00000559822 PER2O15055 1255 aa13.71□□□□□ -0.21
SPG11-219ENST00000559822 ASAP2O43150 1006 aa13.71□□□□□ -0.21
SPG11-219ENST00000559822 CSDE1O75534 798 aaKnown RBP13.71□□□□□ -0.21
SPG11-219ENST00000559822 GLP2RO95838 553 aa13.71□□□□□ -0.21
SPG11-219ENST00000559822 ATF7P17544 494 aaPredicted RBP13.71□□□□□ -0.21
SPG11-219ENST00000559822 YWHABP31946 246 aaKnown RBP13.71□□□□□ -0.21
SPG11-219ENST00000559822 SMC1AQ14683 1233 aaKnown RBP13.71□□□□□ -0.21
SPG11-219ENST00000559822 NCAPH2Q6IBW4 605 aa13.71□□□□□ -0.21
SPG11-219ENST00000559822 TMC7Q7Z402 723 aa13.71□□□□□ -0.21
SPG11-219ENST00000559822 SRGAP1Q7Z6B7 1085 aa13.71□□□□□ -0.21
SPG11-219ENST00000559822 SLC39A11Q8N1S5 342 aa13.71□□□□□ -0.21
SPG11-219ENST00000559822 HAS1Q92839 578 aa13.71□□□□□ -0.21
SPG11-219ENST00000559822 TMEM169Q96HH4 297 aa13.71□□□□□ -0.21
SPG11-219ENST00000559822 DHX33Q9H6R0 707 aaKnown RBP13.71□□□□□ -0.21
SPG11-219ENST00000559822 GJB4Q9NTQ9 266 aa13.71□□□□□ -0.21
SPG11-219ENST00000559822 FAM105AQ9NUU6 356 aa13.71□□□□□ -0.21
SPG11-219ENST00000559822 ZNF623O75123 536 aa13.7□□□□□ -0.22
SPG11-219ENST00000559822 HOXB8P17481 243 aaPredicted RBP13.7□□□□□ -0.22
SPG11-219ENST00000559822 NEK4P51957 841 aa13.7□□□□□ -0.22
SPG11-219ENST00000559822 NPEPPSP55786 919 aa13.7□□□□□ -0.22
SPG11-219ENST00000559822 NR5A1Q13285 461 aa13.7□□□□□ -0.22
SPG11-219ENST00000559822 PCBP1Q15365 356 aaKnown RBP eCLIP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms