RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 MAGEB2O15479 319 aa10.79□□□□□ -0.68
SPG11-214ENST00000558989 TMOD1P28289 359 aa10.79□□□□□ -0.68
SPG11-214ENST00000558989 CCDC85BQ15834 202 aaPredicted RBP10.79□□□□□ -0.68
SPG11-214ENST00000558989 FERMT3Q86UX7 667 aa10.79□□□□□ -0.68
SPG11-214ENST00000558989 KSR1Q8IVT5 923 aa10.79□□□□□ -0.68
SPG11-214ENST00000558989 NME8Q8N427 588 aa10.79□□□□□ -0.68
SPG11-214ENST00000558989 NLRP7Q8WX94 980 aa10.79□□□□□ -0.68
SPG11-214ENST00000558989 MTMR9Q96QG7 549 aa10.79□□□□□ -0.68
SPG11-214ENST00000558989 PHOX2BQ99453 314 aa10.79□□□□□ -0.68
SPG11-214ENST00000558989 LIMD1Q9UGP4 676 aa10.79□□□□□ -0.68
SPG11-214ENST00000558989 KIAA1671Q9BY89 1806 aa10.79□□□□□ -0.68
SPG11-214ENST00000558989 ENPP3O14638 875 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 EFCAB14O75071 495 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 SLITRK3O94933 977 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 CSPG5O95196 566 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 GJB5O95377 273 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 OR52Z1P0C646 297 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 YWHABP31946 246 aaKnown RBP10.78□□□□□ -0.68
SPG11-214ENST00000558989 TOB1P50616 345 aaPredicted RBP10.78□□□□□ -0.68
SPG11-214ENST00000558989 TSNAXIP1Q2TAA8 658 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 TUSC1Q2TAM9 212 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 RHPN2Q8IUC4 686 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 PIGOQ8TEQ8 1089 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 LINC01599Q8WXQ3 324 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 PIK3R5Q8WYR1 880 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 APBB2Q92870 758 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 TMEM143Q96AN5 459 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 SPACA7Q96KW9 195 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 NLRP4Q96MN2 994 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 CCDC43Q96MW1 224 aaKnown RBP10.78□□□□□ -0.68
SPG11-214ENST00000558989 YME1L1Q96TA2 773 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 NIFKQ9BYG3 293 aaKnown RBP10.78□□□□□ -0.68
SPG11-214ENST00000558989 CYP26B1Q9NR63 512 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 ST3GAL5Q9UNP4 418 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 COL6A3P12111 3177 aa10.78□□□□□ -0.68
SPG11-214ENST00000558989 MYH11P35749 1972 aa10.77□□□□□ -0.68
SPG11-214ENST00000558989 FNDC1Q4ZHG4 1894 aaPredicted RBP10.77□□□□□ -0.68
SPG11-214ENST00000558989 EPOPA6NHQ4 379 aa10.77□□□□□ -0.68
SPG11-214ENST00000558989 GPR32O75388 356 aa10.77□□□□□ -0.68
SPG11-214ENST00000558989 U2AF2P26368 475 aaKnown RBP eCLIP10.77□□□□□ -0.68
SPG11-214ENST00000558989 POLGP54098 1239 aaPredicted RBP10.77□□□□□ -0.68
SPG11-214ENST00000558989 TAP1Q03518 808 aa10.77□□□□□ -0.68
SPG11-214ENST00000558989 TARBP2Q15633 366 aaKnown RBP10.77□□□□□ -0.68
SPG11-214ENST00000558989 MAEAQ7L5Y9 396 aa10.77□□□□□ -0.68
SPG11-214ENST00000558989 RTN4RL1Q86UN2 441 aaPredicted RBP10.77□□□□□ -0.68
SPG11-214ENST00000558989 GAS2L1Q99501 681 aaPredicted RBP10.77□□□□□ -0.68
SPG11-214ENST00000558989 BRINP2Q9C0B6 783 aa10.77□□□□□ -0.68
SPG11-214ENST00000558989 ZSWIM4Q9H7M6 989 aa10.77□□□□□ -0.68
SPG11-214ENST00000558989 SUCLA2Q9P2R7 463 aaPredicted RBP10.77□□□□□ -0.68
SPG11-214ENST00000558989 A0A087WZ62 844 aa10.77□□□□□ -0.69
SPG11-214ENST00000558989 DENND3A2RUS2 1198 aa10.77□□□□□ -0.69
SPG11-214ENST00000558989 MGEA5O60502 916 aa10.77□□□□□ -0.69
SPG11-214ENST00000558989 DKC1O60832 514 aaKnown RBP eCLIP10.77□□□□□ -0.69
SPG11-214ENST00000558989 MED24O75448 989 aa10.77□□□□□ -0.69
SPG11-214ENST00000558989 GATMP50440 423 aa10.77□□□□□ -0.69
SPG11-214ENST00000558989 DNM2P50570 870 aa10.77□□□□□ -0.69
SPG11-214ENST00000558989 CRYBB1P53674 252 aaPredicted RBP10.77□□□□□ -0.69
SPG11-214ENST00000558989 ADGRE1Q14246 886 aa10.77□□□□□ -0.69
SPG11-214ENST00000558989 ZRSR1Q15695 479 aaKnown RBP10.77□□□□□ -0.69
SPG11-214ENST00000558989 PAN2Q504Q3 1202 aaKnown RBP10.77□□□□□ -0.69
SPG11-214ENST00000558989 TMEM164Q5U3C3 297 aa10.77□□□□□ -0.69
SPG11-214ENST00000558989 FAM228AQ86W67 206 aa10.77□□□□□ -0.69
SPG11-214ENST00000558989 GDPD5Q8WTR4 605 aa10.77□□□□□ -0.69
SPG11-214ENST00000558989 TOP1MTQ969P6 601 aa10.77□□□□□ -0.69
SPG11-214ENST00000558989 CEP89Q96ST8 783 aa10.77□□□□□ -0.69
SPG11-214ENST00000558989 RAD9AQ99638 391 aa10.77□□□□□ -0.69
SPG11-214ENST00000558989 FDXACB1Q9BRP7 624 aaPredicted RBP10.77□□□□□ -0.69
SPG11-214ENST00000558989 TMX1Q9H3N1 280 aa10.77□□□□□ -0.69
SPG11-214ENST00000558989 STXBP5LQ9Y2K9 1186 aa10.77□□□□□ -0.69
SPG11-214ENST00000558989 TMEM265A0A087WTH1 108 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 LINC01553A4QN01 128 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 PP2D1A8MPX8 630 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 MAFO75444 373 aaPredicted RBP10.76□□□□□ -0.69
SPG11-214ENST00000558989 RPLP2P05387 115 aaKnown RBP10.76□□□□□ -0.69
SPG11-214ENST00000558989 SRGAP2CP0DJJ0 459 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 PTMSP20962 102 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 CDC25AP30304 524 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 GPC3P51654 580 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 POTEGQ6S5H5 508 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 OTUD6AQ7L8S5 288 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 C4orf19Q8IY42 314 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 LINC01465Q8N7H1 131 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 RNF169Q8NCN4 708 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 MAFAQ8NHW3 353 aaPredicted RBP10.76□□□□□ -0.69
SPG11-214ENST00000558989 SLC7A3Q8WY07 619 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 ADAM2Q99965 735 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 C17orf80Q9BSJ5 609 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 ADAMTS10Q9H324 1103 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 POLD4Q9HCU8 107 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 ERVK-5Q9HDB9 667 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 LRFN2Q9ULH4 789 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 INSL6Q9Y581 213 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 EYSQ5T1H1 3165 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 KDM3AQ9Y4C1 1321 aa10.76□□□□□ -0.69
SPG11-214ENST00000558989 MYH15Q9Y2K3 1946 aa10.75□□□□□ -0.69
SPG11-214ENST00000558989 K7ELQ4 463 aaPredicted RBP10.75□□□□□ -0.69
SPG11-214ENST00000558989 USO1O60763 962 aaKnown RBP10.75□□□□□ -0.69
SPG11-214ENST00000558989 CUL4AQ13619 759 aa10.75□□□□□ -0.69
SPG11-214ENST00000558989 EMC2Q15006 297 aa10.75□□□□□ -0.69
SPG11-214ENST00000558989 LONRF3Q496Y0 759 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms