RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 EMSYQ7Z589 1322 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 GRID2IPA4D2P6 1211 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 DDX3XO00571 662 aaKnown RBP eCLIP11.57□□□□□ -0.56
CUX1-217ENST00000558836 PLS3P13797 630 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 JAM2P57087 298 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 PPP3CAQ08209 521 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 DMTNQ08495 405 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 NLRX1Q86UT6 975 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 VSIG10LQ86VR7 867 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 PALB2Q86YC2 1186 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 PLEKHO2Q8TD55 490 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 STRA6Q9BX79 667 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 KCND2Q9NZV8 630 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 MAP2K7O14733 419 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 ZNF862O60290 1169 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 USP8P40818 1118 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 MYL7Q01449 175 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 HDXQ7Z353 690 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 KCTD17Q8N5Z5 321 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 HNRNPLLQ8WVV9 542 aaKnown RBP11.57□□□□□ -0.56
CUX1-217ENST00000558836 KAT5Q92993 513 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 KLRG1Q96E93 195 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 INTS2Q9H0H0 1204 aaKnown RBP11.57□□□□□ -0.56
CUX1-217ENST00000558836 CHORDC1Q9UHD1 332 aaPredicted RBP11.57□□□□□ -0.56
CUX1-217ENST00000558836 PRDM4Q9UKN5 801 aa11.57□□□□□ -0.56
CUX1-217ENST00000558836 ERICH4A6NGS2 130 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 WDR64B1ANS9 1081 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 ANKRD63C9JTQ0 380 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 F8VZ95 297 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 FOXN3O00409 490 aaPredicted RBP11.56□□□□□ -0.56
CUX1-217ENST00000558836 DSG3P32926 999 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 PSMC5P62195 406 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 RNF10Q8N5U6 811 aaKnown RBP11.56□□□□□ -0.56
CUX1-217ENST00000558836 LNX1Q8TBB1 728 aaPredicted RBP11.56□□□□□ -0.56
CUX1-217ENST00000558836 BSNDQ8WZ55 320 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 CEP170P1Q96L14 293 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 A1CFQ9NQ94 594 aaKnown RBP11.56□□□□□ -0.56
CUX1-217ENST00000558836 HSPBP1Q9NZL4 362 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 COL11A1P12107 1806 aaPredicted RBP11.56□□□□□ -0.56
CUX1-217ENST00000558836 ZSCAN5CA6NGD5 496 aaPredicted RBP11.56□□□□□ -0.56
CUX1-217ENST00000558836 TCP1P17987 556 aaKnown RBP11.56□□□□□ -0.56
CUX1-217ENST00000558836 MUTP22033 750 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 STAT1P42224 750 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 CNTN2Q02246 1040 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 CBWD2Q8IUF1 395 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 REPS2Q8NFH8 660 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 NEK9Q8TD19 979 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 CCDC102AQ96A19 550 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 GPR88Q9GZN0 384 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 AS3MTQ9HBK9 375 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 UBE2TQ9NPD8 197 aaPredicted RBP11.56□□□□□ -0.56
CUX1-217ENST00000558836 OSGEPQ9NPF4 335 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 LUC7LQ9NQ29 371 aaKnown RBP11.56□□□□□ -0.56
CUX1-217ENST00000558836 TAS2R14Q9NYV8 317 aa11.56□□□□□ -0.56
CUX1-217ENST00000558836 ESYT3A0FGR9 886 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 SP2Q02086 613 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 WDR93Q6P2C0 686 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.55□□□□□ -0.56
CUX1-217ENST00000558836 NIPA1Q7RTP0 329 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 ZNF526Q8TF50 670 aaPredicted RBP11.55□□□□□ -0.56
CUX1-217ENST00000558836 RIN2Q8WYP3 895 aaPredicted RBP11.55□□□□□ -0.56
CUX1-217ENST00000558836 MOV10L1Q9BXT6 1211 aaKnown RBP11.55□□□□□ -0.56
CUX1-217ENST00000558836 GPRC5DQ9NZD1 345 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 DBR1Q9UK59 544 aaKnown RBP11.55□□□□□ -0.56
CUX1-217ENST00000558836 PCDHA10Q9Y5I2 948 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 KIAA1217Q5T5P2 1943 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 KCNK3O14649 394 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 DDNO94850 711 aaPredicted RBP11.55□□□□□ -0.56
CUX1-217ENST00000558836 KRT13P13646 458 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 CCND2P30279 289 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 ADSSP30520 456 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 SOX5P35711 763 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 PAFAH1B1P43034 410 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 VAMP7P51809 220 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 FAM193AP78312 1265 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 MAP2K1Q02750 393 aaPredicted RBP11.55□□□□□ -0.56
CUX1-217ENST00000558836 TREML2Q5T2D2 321 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 CYFIP1Q7L576 1253 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 ARHGEF19Q8IW93 802 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 CCDC60Q8IWA6 550 aaPredicted RBP11.55□□□□□ -0.56
CUX1-217ENST00000558836 TEX2Q8IWB9 1127 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 C4orf19Q8IY42 314 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 ACCSQ96QU6 501 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 MKNK1Q9BUB5 465 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 R3HDMLQ9H3Y0 253 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 CYP39A1Q9NYL5 469 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 ZNF112Q9UJU3 913 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 DENND3A2RUS2 1198 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 ATP8B1O43520 1251 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 ADRB2P07550 413 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 NPTX2P47972 431 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 GALCP54803 685 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 GHRHRQ02643 423 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 GABPB1Q06547 395 aaPredicted RBP11.55□□□□□ -0.56
CUX1-217ENST00000558836 C1orf220Q5T0J3 134 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 MEI1Q5TIA1 1274 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 ZNF746Q6NUN9 644 aaPredicted RBP11.55□□□□□ -0.56
CUX1-217ENST00000558836 EEPD1Q7L9B9 569 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 NSUN6Q8TEA1 469 aaKnown RBP11.55□□□□□ -0.56
CUX1-217ENST00000558836 SLC20A1Q8WUM9 679 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms