RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 PIK3CDO00329 1044 aa13.99□□□□□ -0.17
LDLR-207ENST00000558013 POLR2MP0CAP2 368 aa13.99□□□□□ -0.17
LDLR-207ENST00000558013 FERP16591 822 aa13.99□□□□□ -0.17
LDLR-207ENST00000558013 PRELPP51888 382 aa13.99□□□□□ -0.17
LDLR-207ENST00000558013 ARHGEF19Q8IW93 802 aa13.99□□□□□ -0.17
LDLR-207ENST00000558013 IL31RAQ8NI17 732 aa13.99□□□□□ -0.17
LDLR-207ENST00000558013 SLC5A5Q92911 643 aa13.99□□□□□ -0.17
LDLR-207ENST00000558013 FAM84AQ96KN4 292 aa13.99□□□□□ -0.17
LDLR-207ENST00000558013 SYT11Q9BT88 431 aa13.99□□□□□ -0.17
LDLR-207ENST00000558013 SUCLA2Q9P2R7 463 aaPredicted RBP13.99□□□□□ -0.17
LDLR-207ENST00000558013 SERPINA10Q9UK55 444 aa13.99□□□□□ -0.17
LDLR-207ENST00000558013 ATAD5Q96QE3 1844 aa13.99□□□□□ -0.17
LDLR-207ENST00000558013 SPATA31A6Q5VVP1 1343 aa13.99□□□□□ -0.17
LDLR-207ENST00000558013 TMEM110-MUSTN1A8MSY1 372 aa13.99□□□□□ -0.17
LDLR-207ENST00000558013 DDX3YO15523 660 aaKnown RBP13.99□□□□□ -0.17
LDLR-207ENST00000558013 ATMINO43313 823 aaPredicted RBP13.99□□□□□ -0.17
LDLR-207ENST00000558013 ITGB5P18084 799 aa13.99□□□□□ -0.17
LDLR-207ENST00000558013 MAPK7Q13164 816 aa13.99□□□□□ -0.17
LDLR-207ENST00000558013 IFI16Q16666 785 aaKnown RBP13.99□□□□□ -0.17
LDLR-207ENST00000558013 AGBL1Q96MI9 1066 aa13.99□□□□□ -0.17
LDLR-207ENST00000558013 CBWD1Q9BRT8 395 aa13.99□□□□□ -0.17
LDLR-207ENST00000558013 TMBIM4Q9HC24 238 aa13.99□□□□□ -0.17
LDLR-207ENST00000558013 ZBTB12Q9Y330 459 aaPredicted RBP13.99□□□□□ -0.17
LDLR-207ENST00000558013 GAP43P17677 238 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 USP8P40818 1118 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 GCLMP48507 274 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 HDLBPQ00341 1268 aaKnown RBP13.98□□□□□ -0.17
LDLR-207ENST00000558013 PPP3CAQ08209 521 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 SF3A3Q12874 501 aaKnown RBP eCLIP13.98□□□□□ -0.179e-7■■□□□ 13.7
LDLR-207ENST00000558013 PPP2R5CQ13362 524 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 GRIPAP1Q4V328 841 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 HS2ST1Q7LGA3 356 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 TADA2BQ86TJ2 420 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 KRT35Q92764 455 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 UBE2TQ9NPD8 197 aaPredicted RBP13.98□□□□□ -0.17
LDLR-207ENST00000558013 DMAC2Q9NW81 257 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 APEX2Q9UBZ4 518 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 CNOT8Q9UFF9 292 aaKnown RBP13.98□□□□□ -0.17
LDLR-207ENST00000558013 AMFRQ9UKV5 643 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 FRMD4BQ9Y2L6 1034 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 IPO5O00410 1097 aaKnown RBP13.98□□□□□ -0.17
LDLR-207ENST00000558013 SLC26A4O43511 780 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 MYL7Q01449 175 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 DHX9Q08211 1270 aaKnown RBP13.98□□□□□ -0.17
LDLR-207ENST00000558013 FBXW10Q5XX13 1052 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 RASGEF1CQ8N431 466 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 LMO3Q8TAP4 145 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 WDR11Q9BZH6 1224 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 TUFT1Q9NNX1 390 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 COL20A1Q9P218 1284 aa13.98□□□□□ -0.17
LDLR-207ENST00000558013 COL11A2P13942 1736 aaPredicted RBP13.98□□□□□ -0.17
LDLR-207ENST00000558013 GTPBP10A4D1E9 387 aaKnown RBP13.97□□□□□ -0.17
LDLR-207ENST00000558013 EIF3DO15371 548 aaKnown RBP eCLIP13.97□□□□□ -0.17
LDLR-207ENST00000558013 PPP1R37O75864 691 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 RAD17O75943 681 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 MDH1P40925 334 aaKnown RBP13.97□□□□□ -0.17
LDLR-207ENST00000558013 PPATQ06203 517 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 TTC31Q49AM3 519 aaPredicted RBP13.97□□□□□ -0.17
LDLR-207ENST00000558013 CD302Q8IX05 232 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 PLEKHO2Q8TD55 490 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 CTNNBL1Q8WYA6 563 aaPredicted RBP13.97□□□□□ -0.17
LDLR-207ENST00000558013 GPRC5CQ9NQ84 441 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 ATP8A1Q9Y2Q0 1164 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 GOLGA8IPA6NC78 632 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 GOLGA8JA6NMD2 632 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 E7EVH7 732 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 CES2O00748 559 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 PPP1R12BO60237 982 aaPredicted RBP13.97□□□□□ -0.17
LDLR-207ENST00000558013 CALCAP01258 141 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 TNFAIP3P21580 790 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 ZNF131P52739 623 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 POU5F1Q01860 360 aaKnown RBP13.97□□□□□ -0.17
LDLR-207ENST00000558013 BFSP1Q12934 665 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 PTGISQ16647 500 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 ZDHHC14Q8IZN3 488 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 RFFLQ8WZ73 363 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 BTBD6Q96KE9 485 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 TMEM39BQ9GZU3 492 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 FRMPD4Q14CM0 1322 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 EMSYQ7Z589 1322 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 K7ENM7 598 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 MYZAPP0CAP1 466 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 HSPA1LP34931 641 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 CUL1Q13616 776 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 SLC15A2Q16348 729 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 CC2D2BQ6DHV5 1058 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 TMC3Q7Z5M5 1100 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 EFCAB13Q8IY85 973 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 ATP8B4Q8TF62 1192 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 PPM1EQ8WY54 764 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 CALR3Q96L12 384 aaKnown RBP13.97□□□□□ -0.17
LDLR-207ENST00000558013 NACC1Q96RE7 527 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 CCT8L2Q96SF2 557 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 MRIQ9BWK5 157 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 HOMER2Q9NSB8 354 aa13.97□□□□□ -0.17
LDLR-207ENST00000558013 ARHGEF35A5YM69 484 aa13.96□□□□□ -0.17
LDLR-207ENST00000558013 PADI6Q6TGC4 694 aa13.96□□□□□ -0.17
LDLR-207ENST00000558013 LDHDQ86WU2 507 aa13.96□□□□□ -0.17
LDLR-207ENST00000558013 UHMK1Q8TAS1 419 aaKnown RBP13.96□□□□□ -0.17
LDLR-207ENST00000558013 LMBR1Q8WVP7 490 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms