RNA–Protein interactions for RNA: ENST00000557782.1

TDP1-217, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 318 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-217ENST00000557782 UVSSAQ2YD98 709 aa4.49□□□□□ -1.69
TDP1-217ENST00000557782 RNFT1Q5M7Z0 435 aa4.49□□□□□ -1.69
TDP1-217ENST00000557782 BTBD8Q5XKL5 378 aa4.49□□□□□ -1.69
TDP1-217ENST00000557782 RETSATQ6NUM9 610 aa4.49□□□□□ -1.69
TDP1-217ENST00000557782 C1orf122Q6ZSJ8 110 aa4.49□□□□□ -1.69
TDP1-217ENST00000557782 NGDNQ8NEJ9 315 aaKnown RBP4.49□□□□□ -1.69
TDP1-217ENST00000557782 ZSCAN18Q8TBC5 510 aaPredicted RBP4.49□□□□□ -1.69
TDP1-217ENST00000557782 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.49□□□□□ -1.69
TDP1-217ENST00000557782 PPP1R16BQ96T49 567 aa4.49□□□□□ -1.69
TDP1-217ENST00000557782 PTPN18Q99952 460 aa4.49□□□□□ -1.69
TDP1-217ENST00000557782 TMEM120AQ9BXJ8 343 aa4.49□□□□□ -1.69
TDP1-217ENST00000557782 SLC26A6Q9BXS9 759 aa4.49□□□□□ -1.69
TDP1-217ENST00000557782 ZNF287Q9HBT7 754 aa4.49□□□□□ -1.69
TDP1-217ENST00000557782 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.49□□□□□ -1.69
TDP1-217ENST00000557782 GULP1Q9UBP9 304 aa4.49□□□□□ -1.69
TDP1-217ENST00000557782 LIMCH1Q9UPQ0 1083 aa4.49□□□□□ -1.69
TDP1-217ENST00000557782 ZNF281Q9Y2X9 895 aa4.49□□□□□ -1.69
TDP1-217ENST00000557782 AFG3L2Q9Y4W6 797 aa4.49□□□□□ -1.69
TDP1-217ENST00000557782 NUMBLQ9Y6R0 609 aa4.49□□□□□ -1.69
TDP1-217ENST00000557782 A0A1W2PPL8 197 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 APOL1O14791 398 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 PRPF6O94906 941 aaKnown RBP4.48□□□□□ -1.69
TDP1-217ENST00000557782 FUCA1P04066 466 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 TSHRP16473 764 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 PTPN1P18031 435 aaKnown RBP4.48□□□□□ -1.69
TDP1-217ENST00000557782 MCCP23508 829 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 EDNRBP24530 442 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 MAP2K6P52564 334 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 ARL4CP56559 192 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 CCT2P78371 535 aaKnown RBP4.48□□□□□ -1.69
TDP1-217ENST00000557782 NUCB1Q02818 461 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 TUSC3Q13454 348 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 PMS2P11Q13670 270 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 SEC23AQ15436 765 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 C3orf36Q3SXR2 165 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 CYP27C1Q4G0S4 372 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 VPS53Q5VIR6 699 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 PRAMEF9Q5VWM5 478 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 KIAA1841Q6NSI8 718 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 HIBCHQ6NVY1 386 aaPredicted RBP4.48□□□□□ -1.69
TDP1-217ENST00000557782 FAM180BQ6P0A1 224 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 C4orf50Q6ZRC1 276 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 FAM214BQ7L5A3 538 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.48□□□□□ -1.69
TDP1-217ENST00000557782 TTC7BQ86TV6 843 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 RIOX2Q8IUF8 465 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 LIX1LQ8IVB5 337 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 NPAS3Q8IXF0 933 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 OR14C36Q8NHC7 312 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 TSPEARQ8WU66 669 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 HDAC2Q92769 488 aaKnown RBP4.48□□□□□ -1.69
TDP1-217ENST00000557782 RPGRQ92834 1020 aaKnown RBP4.48□□□□□ -1.69
TDP1-217ENST00000557782 ERCC4Q92889 916 aaPredicted RBP4.48□□□□□ -1.69
TDP1-217ENST00000557782 FAM46AQ96IP4 442 aaKnown RBP4.48□□□□□ -1.69
TDP1-217ENST00000557782 FCRL2Q96LA5 508 aaPredicted RBP4.48□□□□□ -1.69
TDP1-217ENST00000557782 RMDN3Q96TC7 470 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 MYL10Q9BUA6 226 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 ADI1Q9BV57 179 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 COLEC11Q9BWP8 271 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 ERVK13-1Q9NX77 482 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 NXF1Q9UBU9 619 aaKnown RBP4.48□□□□□ -1.69
TDP1-217ENST00000557782 DUSP13Q9UII6 198 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 CRYL1Q9Y2S2 319 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 TMEM98Q9Y2Y6 226 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 ASB1Q9Y576 335 aa4.48□□□□□ -1.69
TDP1-217ENST00000557782 GOLGA6L3A6NEY3 463 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 ISM1B1AKI9 464 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 RBAK-RBAKDNI3L0D1 243 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 K7ENM7 598 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 EIF3FO00303 357 aaPredicted RBP4.47□□□□□ -1.69
TDP1-217ENST00000557782 PIK3R2O00459 728 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 ALX3O95076 343 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 C4BPAP04003 597 aaKnown RBP4.47□□□□□ -1.69
TDP1-217ENST00000557782 PARP1P09874 1014 aaKnown RBP4.47□□□□□ -1.69
TDP1-217ENST00000557782 IFIT1P09914 478 aaKnown RBP4.47□□□□□ -1.69
TDP1-217ENST00000557782 BMP3P12645 472 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 KRT9P35527 623 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 HSPA7P48741 367 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 EPHA5P54756 1037 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 MPP1Q00013 466 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 PRKG2Q13237 762 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 ZACNQ401N2 412 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 PRRT3Q5FWE3 981 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 MUM1L1Q5H9M0 696 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 Q6ZS46 218 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 ARHGAP27Q6ZUM4 889 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 WAPLQ7Z5K2 1190 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 COL23A1Q86Y22 540 aaPredicted RBP4.47□□□□□ -1.69
TDP1-217ENST00000557782 CACNA2D3Q8IZS8 1091 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 HIPK4Q8NE63 616 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 PHOSPHO1Q8TCT1 267 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 ANKS1AQ92625 1134 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 UTP4Q969X6 686 aaKnown RBP4.47□□□□□ -1.69
TDP1-217ENST00000557782 ZBTB10Q96DT7 871 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 FAM167AQ96KS9 214 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 HEXIM2Q96MH2 286 aaKnown RBP4.47□□□□□ -1.69
TDP1-217ENST00000557782 GBP4Q96PP9 640 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.47□□□□□ -1.69
TDP1-217ENST00000557782 ARMT1Q9H993 441 aa4.47□□□□□ -1.69
TDP1-217ENST00000557782 ZMAT3Q9HA38 289 aaKnown RBP4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms