RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 CNOT7Q9UIV1 285 aaKnown RBP12.79□□□□□ -0.36
VIPAS39-211ENST00000557658 ELF3P78545 371 aaPredicted RBP12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 ZNF211Q13398 564 aaPredicted RBP12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 PPP1R7Q15435 360 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 Q4G0T1 1027 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 HIBCHQ6NVY1 386 aaPredicted RBP12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 ZDHHC24Q6UX98 284 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 BARGINQ6ZT62 677 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 FBXO25Q8TCJ0 367 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 NSRP1Q9H0G5 558 aaKnown RBP12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 BHMT2Q9H2M3 363 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 OLFML3Q9NRN5 406 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 MTRF1LQ9UGC7 380 aaKnown RBP12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 PARP2Q9UGN5 583 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 SYNGAP1Q96PV0 1343 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 ANKRD62A6NC57 917 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 MPHOSPH10O00566 681 aaKnown RBP12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 OPLAHO14841 1288 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 PHF2O75151 1096 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 CHRNA3P32297 505 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 FMO5P49326 533 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 SLC29A2Q14542 456 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 RHOT2Q8IXI1 618 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 LRRC34Q8IZ02 419 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 CCDC63Q8NA47 563 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 ARHGEF26Q96DR7 871 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 FAM20AQ96MK3 541 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 SYT11Q9BT88 431 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 ADAM7Q9H2U9 754 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 CCDC134Q9H6E4 229 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 SEPT11Q9NVA2 429 aaKnown RBP12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 TRPC6Q9Y210 931 aa12.78□□□□□ -0.36
VIPAS39-211ENST00000557658 SMIM23A6NLE4 172 aa12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 MIF4GDA9UHW6 222 aaKnown RBP12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 PODXLO00592 558 aa12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 EIF3DO15371 548 aaKnown RBP eCLIP12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 TGFB1I1O43294 461 aa12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 ATP6V1G2O95670 118 aa12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 EYA4O95677 639 aa12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 VCAM1P19320 739 aa12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 KCNA1Q09470 495 aa12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 E2F5Q15329 346 aa12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 NFIL3Q16649 462 aa12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 RPGRQ92834 1020 aaKnown RBP12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 ARHGEF1Q92888 912 aaKnown RBP12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 MKNK1Q9BUB5 465 aa12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 RUSC1Q9BVN2 902 aa12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 THAP2Q9H0W7 228 aa12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 ATP6V0A4Q9HBG4 840 aa12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 SLC12A4Q9UP95 1085 aa12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 RABGAP1Q9Y3P9 1069 aa12.77□□□□□ -0.36
VIPAS39-211ENST00000557658 IBSPP21815 317 aaPredicted RBP12.77□□□□□ -0.37
VIPAS39-211ENST00000557658 SHMT1P34896 483 aa12.77□□□□□ -0.37
VIPAS39-211ENST00000557658 PTGIRP43119 386 aa12.77□□□□□ -0.37
VIPAS39-211ENST00000557658 CYP4A11Q02928 519 aa12.77□□□□□ -0.37
VIPAS39-211ENST00000557658 BTNL9Q6UXG8 535 aa12.77□□□□□ -0.37
VIPAS39-211ENST00000557658 UBL4BQ8N7F7 174 aa12.77□□□□□ -0.37
VIPAS39-211ENST00000557658 CNBD1Q8NA66 436 aa12.77□□□□□ -0.37
VIPAS39-211ENST00000557658 CRYGNQ8WXF5 182 aa12.77□□□□□ -0.37
VIPAS39-211ENST00000557658 ALG3Q92685 438 aa12.77□□□□□ -0.37
VIPAS39-211ENST00000557658 TMEM109Q9BVC6 243 aa12.77□□□□□ -0.37
VIPAS39-211ENST00000557658 NOD2Q9HC29 1040 aa12.77□□□□□ -0.37
VIPAS39-211ENST00000557658 GRHL1Q9NZI5 618 aa12.77□□□□□ -0.37
VIPAS39-211ENST00000557658 SUFUQ9UMX1 484 aa12.77□□□□□ -0.37
VIPAS39-211ENST00000557658 RPTORQ8N122 1335 aa12.77□□□□□ -0.37
VIPAS39-211ENST00000557658 CFAP73A6NFT4 308 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 MEIS2O14770 477 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 FAM13AO94988 1023 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 VIMP08670 466 aaKnown RBP12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 IFI35P80217 286 aaPredicted RBP12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 PRMT1Q99873 361 aaKnown RBP12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 ELAC2Q9BQ52 826 aaKnown RBP12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 POLR3CQ9BUI4 534 aaPredicted RBP12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 INTS2Q9H0H0 1204 aaKnown RBP12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 TMOD4Q9NZQ9 345 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 PCYOX1Q9UHG3 505 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 ALG6Q9Y672 507 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 FRMPD4Q14CM0 1322 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 RAD21O60216 631 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 HADHBP55084 474 aaKnown RBP12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 SLMAPQ14BN4 828 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 C11orf63Q6NUN7 778 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 TAOK1Q7L7X3 1001 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 TRPM8Q7Z2W7 1104 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 KCTD17Q8N5Z5 321 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 LENG9Q96B70 501 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 C18orf8Q96DM3 657 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 GPR88Q9GZN0 384 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 TAOK3Q9H2K8 898 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 SEMA4AQ9H3S1 761 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 DDX4Q9NQI0 724 aaKnown RBP12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 APEX2Q9UBZ4 518 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 BAIAP2L1Q9UHR4 511 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 COG5Q9UP83 839 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 CEP83Q9Y592 693 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 ZMYM2Q9UBW7 1377 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 GGPS1O95749 300 aa12.76□□□□□ -0.37
VIPAS39-211ENST00000557658 RPL21P46778 160 aaKnown RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms