RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 MYO15AQ9UKN7 3530 aa14.3□□□□□ -0.12
SHMT2-223ENST00000556689 ZFHX2Q9C0A1 2572 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-223ENST00000556689 KLF18A0A0U1RQI7 1052 aa14.29□□□□□ -0.12
SHMT2-223ENST00000556689 CCDC196A0A1B0GTZ2 297 aa14.29□□□□□ -0.12
SHMT2-223ENST00000556689 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-223ENST00000556689 ESYT2A0FGR8 921 aa14.29□□□□□ -0.12
SHMT2-223ENST00000556689 PRR23AA6NEV1 266 aa14.29□□□□□ -0.12
SHMT2-223ENST00000556689 ZNF862O60290 1169 aa14.29□□□□□ -0.12
SHMT2-223ENST00000556689 CTSAP10619 480 aa14.29□□□□□ -0.12
SHMT2-223ENST00000556689 CIITAP33076 1130 aa14.29□□□□□ -0.12
SHMT2-223ENST00000556689 ADD1P35611 737 aaKnown RBP14.29□□□□□ -0.12
SHMT2-223ENST00000556689 POLGP54098 1239 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-223ENST00000556689 TBC1D8BQ0IIM8 1120 aa14.29□□□□□ -0.12
SHMT2-223ENST00000556689 DDX53Q86TM3 631 aaKnown RBP14.29□□□□□ -0.12
SHMT2-223ENST00000556689 REXO1Q8N1G1 1221 aaKnown RBP14.29□□□□□ -0.12
SHMT2-223ENST00000556689 CCDC12Q8WUD4 166 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-223ENST00000556689 SLC22A17Q8WUG5 538 aa14.29□□□□□ -0.12
SHMT2-223ENST00000556689 GCOM2Q9BZD3 368 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-223ENST00000556689 ZBP1Q9H171 429 aa14.29□□□□□ -0.12
SHMT2-223ENST00000556689 CYP26B1Q9NR63 512 aa14.29□□□□□ -0.12
SHMT2-223ENST00000556689 NAP1L2Q9ULW6 460 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-223ENST00000556689 IRAK3Q9Y616 596 aa14.29□□□□□ -0.12
SHMT2-223ENST00000556689 EVPLQ92817 2033 aa14.29□□□□□ -0.12
SHMT2-223ENST00000556689 ADAMTS3O15072 1205 aa14.28□□□□□ -0.12
SHMT2-223ENST00000556689 ZC3H11AO75152 810 aaKnown RBP eCLIP14.28□□□□□ -0.12
SHMT2-223ENST00000556689 CSDE1O75534 798 aaKnown RBP14.28□□□□□ -0.12
SHMT2-223ENST00000556689 SKIP12755 728 aa14.28□□□□□ -0.12
SHMT2-223ENST00000556689 EPCAMP16422 314 aa14.28□□□□□ -0.12
SHMT2-223ENST00000556689 GNA11P29992 359 aa14.28□□□□□ -0.12
SHMT2-223ENST00000556689 RCAN1P53805 252 aa14.28□□□□□ -0.12
SHMT2-223ENST00000556689 CABP7Q86V35 215 aa14.28□□□□□ -0.12
SHMT2-223ENST00000556689 PPFIBP1Q86W92 1011 aa14.28□□□□□ -0.12
SHMT2-223ENST00000556689 FLCNQ8NFG4 579 aa14.28□□□□□ -0.12
SHMT2-223ENST00000556689 AUTS2Q8WXX7 1259 aa14.28□□□□□ -0.12
SHMT2-223ENST00000556689 NKD2Q969F2 451 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-223ENST00000556689 ACSF2Q96CM8 615 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-223ENST00000556689 IGSF21Q96ID5 467 aa14.28□□□□□ -0.12
SHMT2-223ENST00000556689 TRAIPQ9BWF2 469 aa14.28□□□□□ -0.12
SHMT2-223ENST00000556689 GALTP07902 379 aa14.27□□□□□ -0.13
SHMT2-223ENST00000556689 PHKA2P46019 1235 aa14.27□□□□□ -0.13
SHMT2-223ENST00000556689 DNM2P50570 870 aa14.27□□□□□ -0.13
SHMT2-223ENST00000556689 PRKCEQ02156 737 aa14.27□□□□□ -0.13
SHMT2-223ENST00000556689 TSGA10IPQ3SY00 556 aa14.27□□□□□ -0.13
SHMT2-223ENST00000556689 TMC5Q6UXY8 1006 aa14.27□□□□□ -0.13
SHMT2-223ENST00000556689 BICD2Q8TD16 824 aa14.27□□□□□ -0.13
SHMT2-223ENST00000556689 INO80BQ9C086 356 aaPredicted RBP14.27□□□□□ -0.13
SHMT2-223ENST00000556689 NRDE2Q9H7Z3 1164 aa14.27□□□□□ -0.13
SHMT2-223ENST00000556689 GAS7O60861 476 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 HMGB1P09429 215 aaKnown RBP14.26□□□□□ -0.13
SHMT2-223ENST00000556689 SFNP31947 248 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 USP11P51784 963 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 FGD1P98174 961 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 RNASELQ05823 741 aaKnown RBP14.26□□□□□ -0.13
SHMT2-223ENST00000556689 DRP2Q13474 957 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 TDGQ13569 410 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 KRT32Q14532 448 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 TARBP2Q15633 366 aaKnown RBP14.26□□□□□ -0.13
SHMT2-223ENST00000556689 ADCK5Q3MIX3 580 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 LONRF3Q496Y0 759 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 NOMO2Q5JPE7 1267 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 TWF2Q6IBS0 349 aaKnown RBP14.26□□□□□ -0.13
SHMT2-223ENST00000556689 GLB1LQ6UWU2 654 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 OTOP3Q7RTS5 596 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 FRMD5Q7Z6J6 570 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 GPR149Q86SP6 731 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 TMEM173Q86WV6 379 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-223ENST00000556689 LPPQ93052 612 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 LENG9Q96B70 501 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 CCDC136Q96JN2 1154 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 RIT2Q99578 217 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 EMILIN2Q9BXX0 1053 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 NIFKQ9BYG3 293 aaKnown RBP14.26□□□□□ -0.13
SHMT2-223ENST00000556689 CACNA1HO95180 2353 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 PTPRZ1P23471 2315 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-223ENST00000556689 MYO10Q9HD67 2058 aa14.26□□□□□ -0.13
SHMT2-223ENST00000556689 A0A087WZ62 844 aa14.25□□□□□ -0.13
SHMT2-223ENST00000556689 SPDYE4A6NLX3 237 aa14.25□□□□□ -0.13
SHMT2-223ENST00000556689 MSH4O15457 936 aa14.25□□□□□ -0.13
SHMT2-223ENST00000556689 PRPF3O43395 683 aaKnown RBP14.25□□□□□ -0.13
SHMT2-223ENST00000556689 CHMP2AO43633 222 aa14.25□□□□□ -0.13
SHMT2-223ENST00000556689 ZNF623O75123 536 aa14.25□□□□□ -0.13
SHMT2-223ENST00000556689 OFD1O75665 1012 aa14.25□□□□□ -0.13
SHMT2-223ENST00000556689 SFPQP23246 707 aaKnown RBP eCLIP14.25□□□□□ -0.13
SHMT2-223ENST00000556689 KLRC2P26717 231 aa14.25□□□□□ -0.13
SHMT2-223ENST00000556689 JAK3P52333 1124 aa14.25□□□□□ -0.13
SHMT2-223ENST00000556689 AKAP17AQ02040 695 aaKnown RBP14.25□□□□□ -0.13
SHMT2-223ENST00000556689 UGCGQ16739 394 aa14.25□□□□□ -0.13
SHMT2-223ENST00000556689 RASEFQ8IZ41 740 aa14.25□□□□□ -0.13
SHMT2-223ENST00000556689 ADSSL1Q8N142 457 aa14.25□□□□□ -0.13
SHMT2-223ENST00000556689 FDXACB1Q9BRP7 624 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-223ENST00000556689 TEKT3Q9BXF9 490 aa14.25□□□□□ -0.13
SHMT2-223ENST00000556689 UNC45AQ9H3U1 944 aa14.25□□□□□ -0.13
SHMT2-223ENST00000556689 SFXN1Q9H9B4 322 aa14.25□□□□□ -0.13
SHMT2-223ENST00000556689 TBC1D13Q9NVG8 400 aa14.25□□□□□ -0.13
SHMT2-223ENST00000556689 STK39Q9UEW8 545 aa14.25□□□□□ -0.13
SHMT2-223ENST00000556689 INPP5FQ9Y2H2 1132 aa14.25□□□□□ -0.13
SHMT2-223ENST00000556689 VPS13AQ96RL7 3174 aa14.25□□□□□ -0.13
SHMT2-223ENST00000556689 DMDP11532 3685 aa14.24□□□□□ -0.13
SHMT2-223ENST00000556689 PI15O43692 258 aa14.24□□□□□ -0.13
SHMT2-223ENST00000556689 ALDH2P05091 517 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms