RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 RPLP2P05387 115 aaKnown RBP11.44□□□□□ -0.58
SCFD1-220ENST00000556486 CALM1P0DP23 149 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 CALM2P0DP24 149 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 CALM3P0DP25 149 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 KCNA2P16389 499 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 ATF7P17544 494 aaPredicted RBP11.44□□□□□ -0.58
SCFD1-220ENST00000556486 MCM5P33992 734 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 PBX3P40426 434 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 NBL1P41271 181 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 MARSP56192 900 aaKnown RBP11.44□□□□□ -0.58
SCFD1-220ENST00000556486 DUSP6Q16828 381 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 FAM102BQ5T8I3 360 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 ANKRD54Q6NXT1 300 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 SYCE2Q6PIF2 218 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 SGMS1Q86VZ5 419 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 THNSL1Q8IYQ7 743 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 SRBD1Q8N5C6 995 aaKnown RBP11.44□□□□□ -0.58
SCFD1-220ENST00000556486 SMARCC2Q8TAQ2 1214 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 ATP8B4Q8TF62 1192 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 GLG1Q92896 1179 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 YTHDC1Q96MU7 727 aaKnown RBP11.44□□□□□ -0.58
SCFD1-220ENST00000556486 S1PR5Q9H228 398 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 TMX1Q9H3N1 280 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 PADI3Q9ULW8 664 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 PRC1O43663 620 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 MGEA5O60502 916 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 ATP9AO75110 1047 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 FGF18O76093 207 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 ITGB5P18084 799 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 CLDN10P78369 228 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 PAK2Q13177 524 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 MTMR3Q13615 1198 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 NAALADL2Q58DX5 795 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 KANK3Q6NY19 840 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 CASC1Q6TDU7 716 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 FAM43BQ6ZT52 329 aaPredicted RBP11.43□□□□□ -0.58
SCFD1-220ENST00000556486 ERMP1Q7Z2K6 904 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 C1orf216Q8TAB5 229 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 FEZF2Q8TBJ5 459 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 PPP1R16BQ96T49 567 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 LSG1Q9H089 658 aaKnown RBP11.43□□□□□ -0.58
SCFD1-220ENST00000556486 MFSD1Q9H3U5 465 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 POMKQ9H5K3 350 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 PSTPIP2Q9H939 334 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 EVA1BQ9NVM1 165 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 ERAP1Q9NZ08 941 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 GINS2Q9Y248 185 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 PCDHB12Q9Y5F1 795 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 UBIAD1Q9Y5Z9 338 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 ZNF292O60281 2723 aa11.43□□□□□ -0.58
SCFD1-220ENST00000556486 GSTTP1A0A1W2PQM5 241 aa11.42□□□□□ -0.58
SCFD1-220ENST00000556486 PLEKHA8P1O95397 391 aa11.42□□□□□ -0.58
SCFD1-220ENST00000556486 CCNYL3P0C7X3 344 aa11.42□□□□□ -0.58
SCFD1-220ENST00000556486 STAG3L1P0CL83 205 aa11.42□□□□□ -0.58
SCFD1-220ENST00000556486 ZNF16P17020 682 aaPredicted RBP11.42□□□□□ -0.58
SCFD1-220ENST00000556486 CA8P35219 290 aa11.42□□□□□ -0.58
SCFD1-220ENST00000556486 SCNN1AP37088 669 aa11.42□□□□□ -0.58
SCFD1-220ENST00000556486 ATP1A2P50993 1020 aa11.42□□□□□ -0.58
SCFD1-220ENST00000556486 NFX1Q12986 1120 aaKnown RBP11.42□□□□□ -0.58
SCFD1-220ENST00000556486 NECTIN1Q15223 517 aa11.42□□□□□ -0.58
SCFD1-220ENST00000556486 C12orf76Q8N812 135 aaPredicted RBP11.42□□□□□ -0.58
SCFD1-220ENST00000556486 COLGALT1Q8NBJ5 622 aa11.42□□□□□ -0.58
SCFD1-220ENST00000556486 FLCNQ8NFG4 579 aa11.42□□□□□ -0.58
SCFD1-220ENST00000556486 SEPT1Q8WYJ6 367 aa11.42□□□□□ -0.58
SCFD1-220ENST00000556486 MYL10Q9BUA6 226 aa11.42□□□□□ -0.58
SCFD1-220ENST00000556486 ENTPD7Q9NQZ7 604 aa11.42□□□□□ -0.58
SCFD1-220ENST00000556486 TYW1Q9NV66 732 aaKnown RBP11.42□□□□□ -0.58
SCFD1-220ENST00000556486 DNAAF2Q9NVR5 837 aaKnown RBP11.42□□□□□ -0.58
SCFD1-220ENST00000556486 SORCS3Q9UPU3 1222 aa11.42□□□□□ -0.58
SCFD1-220ENST00000556486 TRPV2Q9Y5S1 764 aa11.42□□□□□ -0.58
SCFD1-220ENST00000556486 SQORQ9Y6N5 450 aa11.42□□□□□ -0.58
SCFD1-220ENST00000556486 CCDC69A6NI79 296 aa11.41□□□□□ -0.58
SCFD1-220ENST00000556486 SLC27A2O14975 620 aa11.41□□□□□ -0.58
SCFD1-220ENST00000556486 PI15O43692 258 aa11.41□□□□□ -0.58
SCFD1-220ENST00000556486 NR1I2O75469 434 aa11.41□□□□□ -0.58
SCFD1-220ENST00000556486 KRT37O76014 449 aa11.41□□□□□ -0.58
SCFD1-220ENST00000556486 FGFR1P11362 822 aa11.41□□□□□ -0.58
SCFD1-220ENST00000556486 INSRRP14616 1297 aa11.41□□□□□ -0.58
SCFD1-220ENST00000556486 MTMR1Q13613 665 aa11.41□□□□□ -0.58
SCFD1-220ENST00000556486 COL9A3Q14050 684 aaPredicted RBP11.41□□□□□ -0.58
SCFD1-220ENST00000556486 TMTC3Q6ZXV5 915 aa11.41□□□□□ -0.58
SCFD1-220ENST00000556486 FANCBQ8NB91 859 aa11.41□□□□□ -0.58
SCFD1-220ENST00000556486 TCF25Q9BQ70 676 aa11.41□□□□□ -0.58
SCFD1-220ENST00000556486 SMARCAD1Q9H4L7 1026 aa11.41□□□□□ -0.58
SCFD1-220ENST00000556486 JADE2Q9NQC1 790 aa11.41□□□□□ -0.58
SCFD1-220ENST00000556486 PCDHB7Q9Y5E2 793 aa11.41□□□□□ -0.58
SCFD1-220ENST00000556486 GVINP1Q7Z2Y8 2422 aa11.41□□□□□ -0.58
SCFD1-220ENST00000556486 SPDYE3A6NKU9 549 aa11.4□□□□□ -0.58
SCFD1-220ENST00000556486 M0QZ92 97 aa11.4□□□□□ -0.58
SCFD1-220ENST00000556486 FSCN2O14926 492 aa11.4□□□□□ -0.58
SCFD1-220ENST00000556486 KCNC3Q14003 757 aa11.4□□□□□ -0.58
SCFD1-220ENST00000556486 TSGA10IPQ3SY00 556 aa11.4□□□□□ -0.58
SCFD1-220ENST00000556486 IER5Q5VY09 327 aa11.4□□□□□ -0.58
SCFD1-220ENST00000556486 CREB3L3Q68CJ9 461 aa11.4□□□□□ -0.58
SCFD1-220ENST00000556486 PPP1R18Q6NYC8 613 aa11.4□□□□□ -0.58
SCFD1-220ENST00000556486 KIAA2013Q8IYS2 634 aa11.4□□□□□ -0.58
SCFD1-220ENST00000556486 ADAM32Q8TC27 787 aa11.4□□□□□ -0.58
SCFD1-220ENST00000556486 KCNG4Q8TDN1 519 aa11.4□□□□□ -0.58
SCFD1-220ENST00000556486 RMDN1Q96DB5 314 aa11.4□□□□□ -0.58
SCFD1-220ENST00000556486 ADAM2Q99965 735 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms