RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, human

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS33B-204	ENST00000554660	IGKV6D-21	A0A0A0MT36	114 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	GOLGA6L4	A6NEF3	574 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	ZBTB42	B2RXF5	422 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	GPR182	O15218	404 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	HBP1	O60381	514 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	ATG7	O95352	703 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	VTN	P04004	478 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	SLC26A2	P50443	739 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	NAPA	P54920	295 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	PLCB3	Q01970	1234 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	CEP55	Q53EZ4	464 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	PDE12	Q6L8Q7	609 aa	Known RBP	12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	PDXDC2P	Q6P474	469 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	ABHD15	Q6UXT9	468 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	TMEM184A	Q6ZMB5	413 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	LRRC55	Q6ZSA7	311 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	ASCL5	Q7RTU5	278 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	TRMT1L	Q7Z2T5	733 aa	Known RBP	12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	NECAB1	Q8N987	351 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	RASGRP4	Q8TDF6	673 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	TMEM87B	Q96K49	555 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	RIPOR3	Q96MK2	946 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	POMK	Q9H5K3	350 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	RNF19A	Q9NV58	838 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	LZTS1	Q9Y250	596 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	SLC12A7	Q9Y666	1083 aa		12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	12.83	□□□□□ -0.36
VPS33B-204	ENST00000554660	COL1A2	P08123	1366 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	C2CD4D	B7Z1M9	353 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	GALR2	O43603	387 aa	Predicted RBP	12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	C22orf31	O95567	290 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	WEE2	P0C1S8	567 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	CALM1	P0DP23	149 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	CALM2	P0DP24	149 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	CALM3	P0DP25	149 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	ATP4A	P20648	1035 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	CDC25B	P30305	580 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	EXOSC10	Q01780	885 aa	Known RBP	12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	MTMR3	Q13615	1198 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	FAM160B1	Q5W0V3	765 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	KCNT2	Q6UVM3	1135 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	TMC7	Q7Z402	723 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	CKAP2L	Q8IYA6	745 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	LRRC43	Q8N309	656 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	TMEM105	Q8N8V8	129 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	CASD1	Q96PB1	797 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	MTA3	Q9BTC8	594 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	TMEM117	Q9H0C3	514 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	TNMD	Q9H2S6	317 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	ZNF302	Q9NR11	478 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	PUF60	Q9UHX1	559 aa	Known RBP	12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	HCFC2	Q9Y5Z7	792 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	VPS13A	Q96RL7	3174 aa		12.82	□□□□□ -0.36
VPS33B-204	ENST00000554660	CACNA1H	O95180	2353 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	MEIS1	O00470	390 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	ASGR2	P07307	311 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	CA8	P35219	290 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	SREBF1	P36956	1147 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	LIFR	P42702	1097 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	CLCN3	P51790	818 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	ADCY7	P51828	1080 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	CRYBB1	P53674	252 aa	Predicted RBP	12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	TYRO3	Q06418	890 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	DSC3	Q14574	896 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	ZNF484	Q5JVG2	852 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	ODR4	Q5SWX8	454 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	SWSAP1	Q6NVH7	229 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660		Q6ZUG5	572 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	ABI1	Q8IZP0	508 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	METTL13	Q8N6R0	699 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	FANCB	Q8NB91	859 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	RNF169	Q8NCN4	708 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	MYRIP	Q8NFW9	859 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	ZNF668	Q96K58	619 aa	Predicted RBP	12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	ZNF396	Q96N95	335 aa	Predicted RBP	12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	ZNF558	Q96NG5	402 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	IRF2BPL	Q9H1B7	796 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	ELAC1	Q9H777	363 aa	Known RBP	12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	NGRN	Q9NPE2	291 aa	Known RBP	12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	RIC8A	Q9NPQ8	531 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	RNF216	Q9NWF9	866 aa	Predicted RBP	12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	RCOR1	Q9UKL0	485 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	SORCS3	Q9UPU3	1222 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	R3HCC1	Q9Y3T6	440 aa	Known RBP	12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	NR2E1	Q9Y466	385 aa		12.81	□□□□□ -0.36
VPS33B-204	ENST00000554660	FAM86B1	E9PN63	330 aa		12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660		H3BQV1	296 aa		12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	GPR32	O75388	356 aa		12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	FAM86B2	P0C5J1	330 aa		12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	HOXB8	P17481	243 aa	Predicted RBP	12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	PPM1A	P35813	382 aa		12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	ZNF76	P36508	570 aa		12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	FAM189B	P81408	668 aa		12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	DHX8	Q14562	1220 aa	Known RBP	12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	NOLC1	Q14978	699 aa	Known RBP eCLIP	12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	TPRN	Q4KMQ1	711 aa		12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	CLLU1OS	Q5K130	101 aa		12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	PPP1R18	Q6NYC8	613 aa		12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	MIS18BP1	Q6P0N0	1132 aa		12.8	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 33 ms