RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 CROCCP2Q86T23 111 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 ZSCAN29Q8IWY8 852 aaPredicted RBP10.27□□□□□ -0.77
SIX4-202ENST00000554079 ZBED8Q8IZ13 594 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 NCOA7Q8NI08 942 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 EPS8L3Q8TE67 593 aaKnown RBP10.27□□□□□ -0.77
SIX4-202ENST00000554079 CRAMP1Q96RY5 1269 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 EIF2AQ9BY44 585 aaKnown RBP10.27□□□□□ -0.77
SIX4-202ENST00000554079 MAGEC2Q9UBF1 373 aaPredicted RBP10.27□□□□□ -0.77
SIX4-202ENST00000554079 SIK3Q9Y2K2 1263 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 FAM32AQ9Y421 112 aaKnown RBP10.27□□□□□ -0.77
SIX4-202ENST00000554079 SSU72P8A0A1W2PR75 194 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 VILLO15195 856 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 ANXA1P04083 346 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 AUHQ13825 339 aaKnown RBP10.26□□□□□ -0.77
SIX4-202ENST00000554079 GRM2Q14416 872 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 CWF19L2Q2TBE0 894 aaKnown RBP10.26□□□□□ -0.77
SIX4-202ENST00000554079 MFSD5Q6N075 450 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 B3GNT6Q6ZMB0 384 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 TRIM67Q6ZTA4 783 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 TAOK1Q7L7X3 1001 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 SATL1Q86VE3 508 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 EXOC8Q8IYI6 725 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 IL17REQ8NFR9 667 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 MGARPQ8TDB4 240 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 TRIM11Q96F44 468 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 PCMTD1Q96MG8 357 aaPredicted RBP10.26□□□□□ -0.77
SIX4-202ENST00000554079 MIPEPQ99797 713 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 DUSP9Q99956 384 aaKnown RBP10.26□□□□□ -0.77
SIX4-202ENST00000554079 AP1M1Q9BXS5 423 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 STMN4Q9H169 189 aaPredicted RBP10.26□□□□□ -0.77
SIX4-202ENST00000554079 USP29Q9HBJ7 922 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 UBAP1Q9NZ09 502 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 CLIC5Q9NZA1 410 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 NDUFA13Q9P0J0 144 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 AMACRQ9UHK6 382 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 KCNJ14Q9UNX9 436 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 NOC2LQ9Y3T9 749 aaKnown RBP10.26□□□□□ -0.77
SIX4-202ENST00000554079 FADS3Q9Y5Q0 445 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 LRP6O75581 1613 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 NWD1Q149M9 1564 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 RPTORQ8N122 1335 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 SPDYE16A6NNV3 312 aaPredicted RBP10.26□□□□□ -0.77
SIX4-202ENST00000554079 GRM8O00222 908 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 PGRMC1O00264 195 aaKnown RBP10.26□□□□□ -0.77
SIX4-202ENST00000554079 PLSCR1O15162 318 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 ITGA4P13612 1032 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 KLRC1P26715 233 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 PTPN4P29074 926 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 ACADVLP49748 655 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 KLRC3Q07444 240 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 NR5A1Q13285 461 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 SPIDRQ14159 915 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 SPDYAQ5MJ70 313 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 HGSNATQ68CP4 663 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 ZNF280DQ6N043 979 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 LRRC8BQ6P9F7 803 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 PACS1Q6VY07 963 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 GET4Q7L5D6 327 aaPredicted RBP10.26□□□□□ -0.77
SIX4-202ENST00000554079 NUP93Q8N1F7 819 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 FAM133AQ8N9E0 248 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 ANKK1Q8NFD2 765 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 NKX2-3Q8TAU0 364 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 BAP1Q92560 729 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 GRAMD1AQ96CP6 724 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 HSPBAP1Q96EW2 488 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 TRIM47Q96LD4 638 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 TRIM51Q9BSJ1 452 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 CELF4Q9BZC1 486 aaKnown RBP10.26□□□□□ -0.77
SIX4-202ENST00000554079 TAOK3Q9H2K8 898 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 CUEDC2Q9H467 287 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 CNOT7Q9UIV1 285 aaKnown RBP10.26□□□□□ -0.77
SIX4-202ENST00000554079 MAP3K2Q9Y2U5 619 aa10.26□□□□□ -0.77
SIX4-202ENST00000554079 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.26□□□□□ -0.77
SIX4-202ENST00000554079 NFAT5O94916 1531 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 PKD1L3Q7Z443 1732 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 TMEM120BA0PK00 339 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 LRRC53A6NM62 1247 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 GNAT3A8MTJ3 354 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 E9PBE3 544 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 DDX3XO00571 662 aaKnown RBP eCLIP10.25□□□□□ -0.77
SIX4-202ENST00000554079 KCNK3O14649 394 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 PDE5AO76074 875 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 HOXB7P09629 217 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 GUCY1A2P33402 732 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 VPS41P49754 854 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 PFKPQ01813 784 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 TFCP2Q12800 502 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 KIF22Q14807 665 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 VWA3BQ502W6 1294 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 CCDC174Q6PII3 467 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 ACAD11Q709F0 780 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 BBS5Q8N3I7 341 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 TAF4BQ92750 862 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 DGCR14Q96DF8 476 aaKnown RBP10.25□□□□□ -0.77
SIX4-202ENST00000554079 CNOT6LQ96LI5 555 aaKnown RBP10.25□□□□□ -0.77
SIX4-202ENST00000554079 TGS1Q96RS0 853 aaKnown RBP10.25□□□□□ -0.77
SIX4-202ENST00000554079 CGREF1Q99674 301 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 ECSITQ9BQ95 431 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 SLC26A6Q9BXS9 759 aa10.25□□□□□ -0.77
SIX4-202ENST00000554079 BHMT2Q9H2M3 363 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms