RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 COL4A3BPQ9Y5P4 624 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 A0A0U1RQF3 1178 aa11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 GAS2O43903 313 aaKnown RBP11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 ZSCAN20P17040 1043 aaPredicted RBP11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 CTNNB1P35222 781 aa11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 LAMTOR4Q0VGL1 99 aa11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 PTGDRQ13258 359 aa11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 IL17AQ16552 155 aa11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 PAN2Q504Q3 1202 aaKnown RBP11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 ZNF598Q86UK7 904 aaKnown RBP11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 FERMT3Q86UX7 667 aa11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 PSPC1Q8WXF1 523 aaKnown RBP11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 MRPL38Q96DV4 380 aaKnown RBP11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 NLRP4Q96MN2 994 aa11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 TRAIPQ9BWF2 469 aa11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 INO80BQ9C086 356 aaPredicted RBP11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 MINDY3Q9H8M7 445 aa11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 ATP6V0A4Q9HBG4 840 aa11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 CHST12Q9NRB3 414 aa11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 SMC3Q9UQE7 1217 aa11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 RWDD3Q9Y3V2 267 aa11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 TTC3P53804 2025 aa11.46□□□□□ -0.57
CCDC88C-206ENST00000553437 BDP1A6H8Y1 2624 aa11.46□□□□□ -0.58
CCDC88C-206ENST00000553437 TBKBP1A7MCY6 615 aa11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 ASAP2O43150 1006 aa11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 DGAT1O75907 488 aa11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 SRGAP2CP0DJJ0 459 aa11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 FGFR1P11362 822 aa11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 ATF7P17544 494 aaPredicted RBP11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 IBSPP21815 317 aaPredicted RBP11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 SFPQP23246 707 aaKnown RBP eCLIP11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 RPA1P27694 616 aa11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 ARL2P36404 184 aa11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 ECM1Q16610 540 aa11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 LARP1BQ659C4 914 aaKnown RBP11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 MCTP1Q6DN14 999 aa11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 ASAP3Q8TDY4 903 aa11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 ATXN2LQ8WWM7 1075 aaKnown RBP11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 TCP11Q8WWU5 503 aa11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 CASD1Q96PB1 797 aa11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 MTRQ99707 1265 aa11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 PLVAPQ9BX97 442 aa11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 THEGQ9P2T0 379 aa11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 DBR1Q9UK59 544 aaKnown RBP11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.45□□□□□ -0.58
CCDC88C-206ENST00000553437 H3BQV1 296 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 GRM6O15303 877 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 EOMESO95936 686 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 MUTP22033 750 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 HOXA11P31270 313 aaPredicted RBP11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 PRPHP41219 470 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 CAMK1Q14012 370 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 PDIA5Q14554 519 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 RILPL1Q5EBL4 403 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 LRRC55Q6ZSA7 311 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 CATSPER4Q7RTX7 472 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 SRGAP1Q7Z6B7 1085 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 IFNLR1Q8IU57 520 aaPredicted RBP11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 IGSF22Q8N9C0 903 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 RNF149Q8NC42 400 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 P2RX5Q93086 422 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 ASB2Q96Q27 587 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 NACC1Q96RE7 527 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 C11orf84Q9BUA3 381 aaPredicted RBP11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 TMEM117Q9H0C3 514 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 CWH43Q9H720 699 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 TYW1Q9NV66 732 aaKnown RBP11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 DACT1Q9NYF0 836 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 HCSTQ9UBK5 93 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 PLAGL2Q9UPG8 496 aa11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 PRRC2BQ5JSZ5 2229 aaKnown RBP11.44□□□□□ -0.58
CCDC88C-206ENST00000553437 MYH9P35579 1960 aaKnown RBP11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 MYO9BQ13459 2157 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 LAD1O00515 517 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 HOXA2O43364 376 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 ZNF623O75123 536 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 ITGB1P05556 798 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 GLRA2P23416 452 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 DNAJB1P25685 340 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 PLA2G5P39877 138 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 PHKA2P46019 1235 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 PTENP60484 403 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 MRPS5P82675 430 aaKnown RBP11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 ATP2C1P98194 919 aaPredicted RBP11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 TFF2Q03403 129 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 POU5F1BQ06416 359 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 CAPSQ13938 189 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 MXD4Q14582 209 aaPredicted RBP11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 SKIV2LQ15477 1246 aaKnown RBP11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 PTPROQ16827 1216 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 NAALADL2Q58DX5 795 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 TJAP1Q5JTD0 557 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 CLLU1OSQ5K130 101 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 KLHL23Q8NBE8 558 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 ERMNQ8TAM6 284 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 SPPL3Q8TCT6 385 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 MMTAG2Q9BU76 263 aaKnown RBP11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 LMAN2LQ9H0V9 348 aa11.43□□□□□ -0.58
CCDC88C-206ENST00000553437 ALG13Q9NP73 1137 aaKnown RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms